Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01514 ATGCCTCCAAGAACGGTGAAGAGAGGGGCTGGCACAGCTGGGGGAAAGAGGGGTGGCAGAGGCTCCAGGGGGACGCCTTCTAAGGCTTCCCAGAACCAGCAGCAAGCTGAAGCTGCAGTAGAGATGGTGAAGCATGAAGAAAAGCCGGTTCCTGAGGAGGATGTCAAAGTTGAGGAGAAGCCCGTTGTTGAGGAGAAATCAGTCGAAGTAGCAAAGCCTGTTTATGAGGAGAAGTGTATTGATATAAATCAAATGGCTACAGAGCATGAAGTTGAAGAGAAGTCTATAACTAATGGGTCGGCTGTCGTGAAAATGCCTCCACTATCTTTTGGGTTGCACGACCGTCATTGTGGTCTTTATTCTGCTCATATATGTGTAAATACTGATGATGAAGAGGAGGTTAAGGAGTCGATAgatgaatatgaaaaagatGAACGCTTAGAATTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGCCGTTGATTATGATGAGAAGGAAATTGACCAAGATGATGTACAAGAGGTGGTGGAAGAACCTCGGGAGAATGTAGGTGAAGAGGAGGGTGATATGGGTGAGGAGGAAGTGGAAGATGTGCACGAGGAACTCGAGGGAGAAGAGGATGATGAGCATGCAGGTGAGGAGCATGATCATGCAGAGCTGGTTGATGTAGACGAAGATGAACACCATGAAGTTGTTAAGGAGAGGCGCAAGCGCAAGGAGTTTGAAGTATTTGTTGGGGGCTTAGACAAGGATGCCACTGAGGATGATCTGAGGAAGGTTTTTAAATCAGTTGGTGAGGTTACTGAAGTAAGGCTGATGATGAATCCTCAGACTAAAAAGAACAAGGGCTTTGCTTTCTTGCGTTTTGCAACTATGGAGCAAGCTAGACGAGCTGTAACAGATTTAAAGAATCCAGTGATTAATGGCAAACAATGTGGTGTTGCTCCAAGCCAGGACAGTGATACCCTCTTTTTGGGTAATATATGCAAGACATGGACAAAGGAGGCtTTAAAGGAGAAGTTAAAACATTATGGAGTTGAGGCTGTTGAGGATTTGACTTTAGTAGAAGATAGCAACAATGAGGGAATGAACCGTGGATTTGCctttttgcaattttcatCTCGCTCAGATGCTATGGATGCCTTTAAACGACTACAGAAGAGAGATGTTGTGTTTGGAGTTGGTAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCAGGTGATGAAATCATGGCGCAGGTTAAAACTGTATTTATTGATGGTCTGCCACCTTCATGGGATGAGGATCATGTCTGCAAACTTCTTAAGAAGTATGGGGCGATTGAAAAGATTGAACTTGCCAGAAACATGCCTTCGGCTAAAAGGAAGGACTTTGGTTTTGTTACCTTTGACACTCATGATGCTGCTGTGACATGTGCTAAAAGCATTAATAATGCAGAGTTGGGCGAAGGAGACATCAAGGCAAAAGTTCGAGCTAGGCTTTCGAGACCACTTCAGAGAGGCCGTGGGAAACATGTTAGTCGAGGAGAATACCAACCTAGCAGAAGTTCTGGAAGAGTCTCCACAAGGCCTTCATGGGGTCGACCTGCACCGCATAGTCTCCCTACCCGTGGGATAAGAGGTGTTGGAAGCCGTGTCCCATCAGTTAGGCCTGTCAGTGTGAGAGATAGACGTCTTGTCATGTCTATGCCTCTGAGAGCCAGGCCGGTGGCACCACCAGCTAGATCCTATGACAGGAGGCCAGCAGTTTCTGCATATCCCAAAAGTAGCATGAAGAGGGATATTGGTCGAAGAGAGGATCTGCCACCTTCAAGAAGCAGAGTTACTGTAGATTACGGTGCTAGGGTGGCTTCTGACAGACGCCTGTCATCTTATAGGGATTACCCTTCCCGTGGCCCTGGTTATACTGAGCTTCATAGAAGTACATCTCGTGCTGCTCCCAGGAGAAGTTATGTGGATGATGCCTATGGACAAAGATTTGAGAGGCCTCCTCCCCCTCCCCCTTCAAGTTACCGTGAAGGACGCTCTCGTGATTATGACACTATTTCTGGGTCGAAACGTCCATATACTGCCATAGATGATGTACCTCCACGATATGCAGATACTGGTGCCCGCCAATCAAGAGCTCGATTAGACTATGATTACGGAGGTAGTGCTTCTCAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGCATGGGATATGGTACCAGTAGAAGTTCTATGTCAAATCAAGAGTCACATGGGATGTATGGCAGTCGCCAGGGCATGAGTTACGGTGGAGGTTCTTTTGGCAGTAGTGATGTTGGTGGTATGTACTCATCAAGTTATGGTGGTGATTACATGCCTCGTGGAAGTGATGTTGGTGGCAGCTCGTACTCATCCATGTATTCGGGCAGGGGTGTCAGTGGTAGCAGTTACATGGGTAGTAGTGGATCTGGGCCTTATTATTG 2480 0.4621 MPPRTVKRGAGTAGGKRGGRGSRGTPSKASQNQQQAEAAVEMVKHEEKPVPEEDVKVEEKPVVEEKSVEVAKPVYEEKCIDINQMATEHEVEEKSITNGSAVVKMPPLSFGLHDRHCGLYSAHICVNTDDEEEVKESIDEYEKDERLELEDNDPEYEPEEYGAVDYDEKEIDQDDVQEVVEEPRENVGEEEGDMGEEEVEDVHEELEGEEDDEHAGEEHDHAELVDVDEDEHHEVVKERRKRKEFEVFVGGLDKDATEDDLRKVFKSVGEVTEVRLMMNPQTKKNKGFAFLRFATMEQARRAVTDLKNPVINGKQCGVAPSQDSDTLFLGNICKTWTKEALKEKLKHYGVEAVEDLTLVEDSNNEGMNRGFAFLQFSSRSDAMDAFKRLQKRDVVFGVGRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDHVCKLLKKYGAIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDIKAKVRARLSRPLQRGRGKHVSRGEYQPSRSSGRVSTRPSWGRPAPHSLPTRGIRGVGSRVPSVRPVSVRDRRLVMSMPLRARPVAPPARSYDRRPAVSAYPKSSMKRDIGRREDLPPSRSRVTVDYGARVASDRRLSSYRDYPSRGPGYTELHRSTSRAAPRRSYVDDAYGQRFERPPPPPPSSYREGRSRDYDTISGSKRPYTAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGTSRSSMSNQESHGMYGSRQGMSYGGGSFGSSDVGGMYSSSYGGDYMPRGSDVGGSSYSSMYSGRGVSGSSYMGSSGSGPYY 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01514 826 CDD RRM_SF 424 496 - -
Bva02g01514 826 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Bva02g01514 826 MobiDBLite consensus disorder prediction 577 712 - -
Bva02g01514 826 MobiDBLite consensus disorder prediction 24 38 - -
Bva02g01514 826 MobiDBLite consensus disorder prediction 182 220 - -
Bva02g01514 826 MobiDBLite consensus disorder prediction 40 59 - -
Bva02g01514 826 CDD RRM_SF 247 318 - -
Bva02g01514 826 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 422 504 IPR000504 GO:0003723
Bva02g01514 826 Gene3D - 325 408 IPR012677 -
Bva02g01514 826 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 315 IPR000504 GO:0003723
Bva02g01514 826 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 424 490 IPR000504 GO:0003723
Bva02g01514 826 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 393 IPR000504 GO:0003723
Bva02g01514 826 CDD RRM_SF 327 405 - -
Bva02g01514 826 Gene3D - 167 324 IPR012677 -
Bva02g01514 826 MobiDBLite consensus disorder prediction 598 612 - -
Bva02g01514 826 SMART rrm1_1 423 496 IPR000504 GO:0003723
Bva02g01514 826 SMART rrm1_1 326 405 IPR000504 GO:0003723
Bva02g01514 826 SMART rrm1_1 246 319 IPR000504 GO:0003723
Bva02g01514 826 MobiDBLite consensus disorder prediction 501 555 - -
Bva02g01514 826 SUPERFAMILY RNA-binding domain, RBD 324 494 IPR035979 GO:0003676
Bva02g01514 826 MobiDBLite consensus disorder prediction 1 59 - -
Bva02g01514 826 PANTHER RNA RECOGNITION MOTIF 1 826 - -
Bva02g01514 826 MobiDBLite consensus disorder prediction 182 214 - -
Bva02g01514 826 Gene3D - 412 530 IPR012677 -
Bva02g01514 826 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 409 IPR000504 GO:0003723
Bva02g01514 826 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 826 - -
Bva02g01514 826 SUPERFAMILY RNA-binding domain, RBD 240 323 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01514 Bva-Chr2 18214705 18220796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01514 247 484 Eukaryotic Initiation Factors Gene Family AT1G49760 24.303 3.38e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01514 - - gmx:100779340 967.607