Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01496 ATGCTTCAGATTCGGCTTAGTAAGGTTCCTGCCTCAGAAGGTTCAGCAGGGGGCAAGCCCTCGCCTGTTGAGACTGTTACTGTTGCATGCCCTGACCACCTAGTCCTTGCTGAACTTCCTGTGGCAAAGGGCATTGGTGCAGCAACTGCTGCTTCCCTTGTCAAGACTTTGGGTCGTAGATCGCGCCGCCAGCTTGGTGAGAGAGTGCATTTCTGTGTTCGCTGTGATTTCCCGATTGCTATCTATGGACGTCTGAGCCCTTGTGAACATGCCTTCTGTCTCGATTGTGCAAGAAGTGATTCTATTTGCTACTtGTGTGATGAACGAATTCAGAAGATTCAGACTATCAAAATGATGGAAGGAATTCTCATCTGTGCAGCTCCTCACTGTCTGAAATCTTTCATGAATAAGGTGGACTTTGAATCTCACATCCAAGAGACCCATGCTGACCTCCTTCGACTCAATGCAGATAAAGAAGATGGAAATGACTCAGAGGCACAGAGTGTTAGGCAACCTTCAGCTTCAGATTCTACTGTCCGTGGTCCCCAAAGGCCAGTTTTTTCTCCAGGTTCAAATTCGCAGCAACATGATCGGGAAGATAAAACTCGCCGACAGACACCAAGAGAGCAGCAATCTTCAAGGTCAACTCTACAAGCAAAGCCACCATTTTTTGGTCAAGCTCAAAATCACCCTTCAGATCCCCAATCCAATTCTGCTGGAGGTATTCAACCGCGGTTCCATCAACAAAGTTTTGATATGCAGGGTGCTCCACAAGATCCTTCCCAATTTGTAGACAGGCCGCAAGGAGTTGTTCCAGAGGGTCCGTATCATGAATATCATCCCATGCATTCTGCACACCCGCCCAATTATTCCATGCCGGTTAATTCAAACCCAGGAATGAACCCTCCTTTACCTTTTGGTTATCCCCCTTACCCGCATGAGGGTGCTCAACCATTTTATGCTGCTCCATATGAGATTCCTCGGCAGGATTCAGCTTCTGAAATGGGTACCGATCAGGGTTCATTACTGGGTTTCCCACCAGGTCCGGGCGGTGGACCAAATTTTCCAGCCAATTATCCCCAGGCATGGCATGCTGGAATGGCTGGTATGCCTCTTGAACAAGCACAGAGTGGTATGGCTATGGATCCAAGAGATGCCAAAGGAATCTTGGCACCCCAACCCATGTCCCTCccacctccacctccaccCCCACCTCACATGTCACATCCCAAACAGAAATACTATGCCGGTGAGCTTGGACGCGATGGCCAGGGTTTTGGGTGGCAGCATGATGGCCGTGATTCCTTTGGTAGTGGCCAGGACTA 1325 0.4845 MLQIRLSKVPASEGSAGGKPSPVETVTVACPDHLVLAELPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKMMEGILICAAPHCLKSFMNKVDFESHIQETHADLLRLNADKEDGNDSEAQSVRQPSASDSTVRGPQRPVFSPGSNSQQHDREDKTRRQTPREQQSSRSTLQAKPPFFGQAQNHPSDPQSNSAGGIQPRFHQQSFDMQGAPQDPSQFVDRPQGVVPEGPYHEYHPMHSAHPPNYSMPVNSNPGMNPPLPFGYPPYPHEGAQPFYAAPYEIPRQDSASEMGTDQGSLLGFPPGPGGGPNFPANYPQAWHAGMAGMPLEQAQSGMAMDPRDAKGILAPQPMSLPPPPPPPPHMSHPKQKYYAGELGRDGQGFGWQHDGRDSFGSGQD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01496 441 MobiDBLite consensus disorder prediction 209 257 - -
Bva02g01496 441 MobiDBLite consensus disorder prediction 166 193 - -
Bva02g01496 441 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Bva02g01496 441 MobiDBLite consensus disorder prediction 194 208 - -
Bva02g01496 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Bva02g01496 441 MobiDBLite consensus disorder prediction 393 409 - -
Bva02g01496 441 MobiDBLite consensus disorder prediction 384 441 - -
Bva02g01496 441 MobiDBLite consensus disorder prediction 159 296 - -
Bva02g01496 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 415 - -
Bva02g01496 441 MobiDBLite consensus disorder prediction 1 21 - -
Bva02g01496 441 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Bva02g01496 441 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Bva02g01496 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 415 IPR040383 GO:0016567|GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01496 1 437 C2H2 Transcription Factor Family AT5G01160 45.946 5.92e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva02g01496 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01496 K15685 - gmx:100817582 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01496 02 18077446 18081109 Bva02g01496 02 18077446 18081109 ECH