Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01465 ATGCACCAGATAATAACCCACAGTTTTATTTTTAAGAGTTTCGGAAGCGGCAAGTGTGGCTGCAATCTTAGCCATGGATATAGATCTCAGAGCTGCAAAGTTAACTACTTAACTTCACAGAACCCATTAAAGTGTCACTGTCCATGTCTTGAACCAGAGCATGAGTCTCTGTCTCAAATGTCCAACGTAGAACTAGGGGGTCACCGGCGTTCGGTGGCGGGAAGTGACATGAGCGGCGACGGCAGCGTGTGTTTCTCTGATGCTGATGATGGCTCTTGCTATTCTCATTTCTATTCAACAAATGGCGGGTCTTATGACGATTACAGCTTCTCTTGTGTCTCTGATCCTGAGGTTGGGGGTGCTCCCGATTCTCGCAGAGTTTCTTCTGTTTCTGATTGTTCAGTGGTGGTGGAAATTGAAAGTGGGGTTCCTGAAATTAAGGTGCATTTGgccaaaatagaaagagattGTAGAATTTGCCATCTGGGTTTGGAGAGTGACAGTCATGAGTGTGGGGTTCCAATTGAATTGGGATGTTCTTGTAAGGATGATTTAGCTGCTGCTCACAAAAACTGTGCCGAGGCCTGGTTTAAGATTAAAGGGAATAGGACTTGTGAAATTTGTCATTCTATTGCACAGAATGTCTATAGCACAACTGAGGAGATGAAAGAGAATTCAGCCGACAGCAACAATGCTAATGCAGCATCGACAGTCTCAACGCCGGCTCCAGGCCCCTCGACAGAAACTCAAAGGTCATTGCAAGAGGCTGCTCCATTCAATAATACCGAAATTGCGCAAGCACCTGATCTCTTTGTGTTTAATGCCGCTGCTGATGTGTGGGACATATCAGTATATATCTACTTGATTCTAGGGACCTCTATGCTGTCAAGTGCCAAACGCAAAAGGACACAttatgaactttg 923 0.4399 MHQIITHSFIFKSFGSGKCGCNLSHGYRSQSCKVNYLTSQNPLKCHCPCLEPEHESLSQMSNVELGGHRRSVAGSDMSGDGSVCFSDADDGSCYSHFYSTNGGSYDDYSFSCVSDPEVGGAPDSRRVSSVSDCSVVVEIESGVPEIKVHLAKIERDCRICHLGLESDSHECGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHSIAQNVYSTTEEMKENSADSNNANAASTVSTPAPGPSTETQRSLQEAAPFNNTEIAQAPDLFVFNAAADVWDISVYIYLILGTSMLSSAKRKRTHYEL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01465 307 MobiDBLite consensus disorder prediction 223 254 - -
Bva02g01465 307 SUPERFAMILY RING/U-box 154 211 - -
Bva02g01465 307 PANTHER OS01G0850200 PROTEIN 59 262 - -
Bva02g01465 307 PANTHER ZINC FINGER, RING-CH-TYPE 59 262 - -
Bva02g01465 307 SMART ringv_2 156 209 IPR011016 GO:0008270
Bva02g01465 307 Pfam RING-variant domain 157 208 IPR011016 GO:0008270
Bva02g01465 307 CDD RING_CH-C4HC3_MARCH 157 209 - -
Bva02g01465 307 ProSiteProfiles Zinc finger RING-CH-type profile. 149 215 IPR011016 GO:0008270
Bva02g01465 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 221 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01465 Bva-Chr2 17914749 17921130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01465 123 274 C3H Transcription Factor Family AT5G05830 49.342 9.90e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01465 - - gmx:100808666 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01465 02 17914749 17921130 Bva12g01647 12 13999193 14001924 ECH
Bva02g01465 02 17914749 17921130 Bva02g01465 02 17914749 17921130 ECH