Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01397 ATGGCTTCGATGGGATCTTCGTACTGGTGCTACAGATGCAATCAATTCGTTAGGGTCCGAATTGATCCTGAGGATGATCTACTCTGCCCTGATTGTGGAGCTGGTTTCGTAGAAGAAATCAGAACCCCCAATCGCTCTTCTTTCCATCGATTCCCTGCTGCGGCAATGTATGTCGATGATGGGTCTAACTCGGAGCATGGCTCCAACCAAAGATTGCGTCGGGGCCGAAGGAATGGTGGAGATCGGTCGCCGTTTAACCCGGTTATTGTTCTCCGTGGACCTGCtgatggtggtggtggcgGGGGAAATGACGGTGTTGGTACTGAAAGGGGAAACTTTGAGCTTTATTACAACGAGGGTACTGGTTCGGGTCTTCGGCCTCTACCTGCAAGCGTCACGGAATTCTTGATGGGTTCCGGATTTGACCATCTTCTTGAGCAGTTGGCTCAGTTAGAAGTGACTGGAGTTGGGCGATTGGACCAGCCTCCGGCTTCGAAAGCTGCAATTGAATCCATGCCTATTATCAAGATTGTTGCTACACATGTTTCTGCAGATTCGCATTGTGCTGTTTGTAAGGAACCGTTTGAGCTTAATACTGATGCTCGTGAAATGCCCTGTAAGCACATTTATCATTCTGATTGTATCCTTCCATGGCTTTCAATTCGCAATTCCTGTCCAGTTTGTCGCCATGAACTACCTACTGAGCTCCACGGGAGTGGCAGCGGCATAAACTCCCCTGCGTCTGATGGTGATAGGGATGATGATGCCGTTGGATTAACCATATGGAGACTTCCTGGTGGTGGGTTTGCTGTAGGGAGGTTCAGTGGGGGCAGAAGAGCTGCGGAACGTGAACTTCCTGTTGTATACACAGAAATGGACGGTGCATTCAATAATGTTGGGCTTCCAAGAAGGAGTTCTTGGGAATATGTAAGAAGTTCAAGGGAGACTAGGGGATTGGGTAGTGTAGTTCGCAACTTCTTCTCATATTTTGGAAGATTTAGGAGTTACTTCTCACGTTCTTCCGGTGCTAATTCTGGGATGAGTGGAAGAACTGGTTCCACTACAGTGTTTACTACATTTTCAAGGAGAAGCAGCTA 1097 0.4722 MASMGSSYWCYRCNQFVRVRIDPEDDLLCPDCGAGFVEEIRTPNRSSFHRFPAAAMYVDDGSNSEHGSNQRLRRGRRNGGDRSPFNPVIVLRGPADGGGGGGNDGVGTERGNFELYYNEGTGSGLRPLPASVTEFLMGSGFDHLLEQLAQLEVTGVGRLDQPPASKAAIESMPIIKIVATHVSADSHCAVCKEPFELNTDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTELHGSGSGINSPASDGDRDDDAVGLTIWRLPGGGFAVGRFSGGRRAAERELPVVYTEMDGAFNNVGLPRRSSWEYVRSSRETRGLGSVVRNFFSYFGRFRSYFSRSSGANSGMSGRTGSTTVFTTFSRRSS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01397 365 SUPERFAMILY RING/U-box 168 235 - -
Bva02g01397 365 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Bva02g01397 365 CDD RING-H2_RNF181 188 232 - -
Bva02g01397 365 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
Bva02g01397 365 Pfam Protein of unknown function (DUF1117) 257 354 IPR010543 -
Bva02g01397 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Bva02g01397 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 321 - -
Bva02g01397 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 2 321 - -
Bva02g01397 365 SMART ring_2 188 228 IPR001841 -
Bva02g01397 365 MobiDBLite consensus disorder prediction 59 87 - -
Bva02g01397 365 MobiDBLite consensus disorder prediction 66 80 - -
Bva02g01397 365 Pfam Ring finger domain 187 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01397 Bva-Chr2 17517953 17519714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01397 127 235 C3H Transcription Factor Family AT5G01980 46.789 3.92e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01397 - - jre:108979935 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01397 02 17517953 17519714 Bva12g02401 12 18164413 18166336 ECH
Bva02g01397 02 17517953 17519714 Bva02g01397 02 17517953 17519714 ECH