Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01347 ATGGCGGTTTCTCTGAATTGGTTCACTCTTAGCTTTCTGTTCATAGCGCTGATTTTTACTAGCGCGAACGCATTCAATGAGAAAGAGCTTCCTGTACAGTCAAGGAATGTAGAAACAGAGAAGTTGCAGAGCTTGAAGAATTCATCAATGGCGGAAAGGTCACATGATTCTCCGAACGAGCATGCAGTTGATAAGCCAGAGGAGATATCTGCTATGGTTGATATGACCATACGCAATCATACGGAAAGAAGGAATCTGGGTTTCTTCTCATGTGGGACTGGGAATCCAATTGATGACTGCTGGCGCTGTGACCGGCGTTGGTACGCTCGCCGCAAGCGCTTGGCTGATTGTGCAATTGGGTTCGGACACAATGCCGTCGGTGGCCGTGATGGAAAATACTATGTTGTGACTGACCCAAGTGACGATGACCCAGTAAACCCCAAACCAGGCACTCTCCGCCACGCCGTGATCCAAGACAGGCCCTTGTGGATTGTGTTCAAAAGGGACATGGTCATTACCTTAAAGCAAGAGCTTATCATGAATAGCTTTAAGACCATAGATGGGCGTGGTGTCAATGTGCACATTGCCTATGGGGCTTGCATTACTATCCAATTCATCACCAATGTCATCATCCATGGCTTACATATCCATGATTGCAAGCAAACTGGTAACGCCATGGTTCGTAGCTCGCCATCACATTTTGGATGGAGGACTTTGGCTGATGGGGATGGAATTTCCATCTTTGGAGCGAGCCACATTTGGATTGACCACAATTCACTCTCTAATTGCGCAGATGGCCTTATTGATGCTATAATGGGATCCACTGCGATTACCATCTCCAATAACTACTTCACCCACCACAATGAGGTTATGTTATTGGGTCACAGCGACTCTTACGTAAGAGATAAGCAAATGCAAGTGACCATTGCCTACAACCATTTTGGCGAGGGGCTAATCCAAAGAATGCCCAGGTGCAGGCATGGATATTTCCATGTGGTAAACAATGACTACACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTAATCCCACAATTAACAGCCAGGGCAACCGATACCTTGCTCCTCTGAACCCTTTTGCCAAGGAgGTAACAAAAAGAGTGGATACAGCAGAAGGAGTGTGGAAACAATGGAACTGGAGGTCAGAGGGAGACCTTCTGCTGGATGGAGCCTTTTTCACTTCATCAGGAGCAGGAGCTGCTTCTAGCTATGCCAGAGCCTCAAGTTTAGGGGCCAAATCCTCTTCTTTGGTTGGTGCCCTTACCTCTGGTGCTGGTGTTCTTAATTGCCGCAGAGGTGTCACGTGTTA 1331 0.4733 MAVSLNWFTLSFLFIALIFTSANAFNEKELPVQSRNVETEKLQSLKNSSMAERSHDSPNEHAVDKPEEISAMVDMTIRNHTERRNLGFFSCGTGNPIDDCWRCDRRWYARRKRLADCAIGFGHNAVGGRDGKYYVVTDPSDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKQTGNAMVRSSPSHFGWRTLADGDGISIFGASHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPLNPFAKEVTKRVDTAEGVWKQWNWRSEGDLLLDGAFFTSSGAGAASSYARASSLGAKSSSLVGALTSGAGVLNCRRGVTC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01347 443 PANTHER PECTATE LYASE 18-RELATED 14 440 IPR045032 GO:0030570
Bva02g01347 443 Gene3D - 94 436 IPR012334 -
Bva02g01347 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Bva02g01347 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Bva02g01347 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Bva02g01347 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Bva02g01347 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Bva02g01347 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Bva02g01347 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Bva02g01347 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Bva02g01347 443 SMART amb_all 169 366 IPR002022 -
Bva02g01347 443 Pfam Pectate lyase 178 358 IPR002022 -
Bva02g01347 443 MobiDBLite consensus disorder prediction 44 68 - -
Bva02g01347 443 MobiDBLite consensus disorder prediction 53 68 - -
Bva02g01347 443 PANTHER PECTATE LYASE 14 440 - -
Bva02g01347 443 SUPERFAMILY Pectin lyase-like 71 438 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01347 Bva-Chr2 17202288 17207383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01347 25 443 Polysaccharide Lyase AT4G13710 75.176 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01347 K01728 - gmx:100809277 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01347 02 17202288 17207383 Bva02g01347 02 17202288 17207383 ECH
Bva02g01347 02 17202288 17207383 Bva07g02455 07 19792724 19799167 ECH