Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01328 ATGATACCGGAGAGAGAAcaaattaagtataaattcAATGATTTCTCGGCTCATTTTGAACAAGCTATAAGCAATATCACCTGTGACAAACTTGATATTTCTGAAGAAGTTAAGGAGCAAGTGAATGTTTTAACTATTGTAACTTTGAAGTTTGGAAGAGCCAAGGAGCATATGGAACCACCTGGAAGGGAGCTTCATGAGTACTTGTTGTCCAATTATAACTGCCGCTCTGATGAGATTTCTGACTCTGTTATACTACGTGTCATCTGTGAAAAGCTACAATTTATCAATGTGGAAGACGTAAAAAATGAGGCGGTTGCACTGCATAAGTTCCCAACTCTGGTTATACCAGATGAGTTTCGCTGCCCAGTATCACTAGAGTTGATGAAAGATCCTGTTATCATTTCCACTGGGCAGACATATGAACGTGGGTGCATAAAGAATTGGCTAGAAGCCGGGCATGGAACATGTACCAAGACACAGCAGATTCTTTCCAGCAACTATCCGCATTCCCAACCATGTTATATATA 530 0.3943 MIPEREQIKYKFNDFSAHFEQAISNITCDKLDISEEVKEQVNVLTIVTLKFGRAKEHMEPPGRELHEYLLSNYNCRSDEISDSVILRVICEKLQFINVEDVKNEAVALHKFPTLVIPDEFRCPVSLELMKDPVIISTGQTYERGCIKNWLEAGHGTCTKTQQILSSNYPHSQPCYI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01328 176 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 114 166 - -
Bva02g01328 176 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 111 - -
Bva02g01328 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 170 IPR013083 -
Bva02g01328 176 Pfam U-box domain 116 167 IPR003613 GO:0004842|GO:0016567
Bva02g01328 176 SUPERFAMILY RING/U-box 115 168 - -
Bva02g01328 176 PANTHER U BOX DOMAIN-CONTAINING 114 166 - -
Bva02g01328 176 PANTHER U BOX DOMAIN-CONTAINING 1 111 - -
Bva02g01328 176 ProSiteProfiles U-box domain profile. 115 176 IPR003613 GO:0004842|GO:0016567
Bva02g01328 176 CDD RING-Ubox_PUB 120 162 IPR045210 -
Bva02g01328 176 SMART Ubox_2 119 175 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01328 Bva-Chr2 17070265 17072760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01328 1 166 U-box Gene Family AT3G46510 35.586 2.82e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01328 - - var:108326899 181.415