Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01327 ATGGTAGCATCTGATAGGTCTTCTGAATTTATAGAGCTTGATGTCCTGCTGAGCAAACTTAGTTCCCAGGACATTGAGGATCGGCAATATGCTGCAGGTAAGCTTCGTCATCTTGCCAGGCAAAATGGTCAAAATCGCCTGCTGATTGCTGAGGCTGGCTCCATACCCCTCCTCGTTGAACTTCTCTATGCAACCGACTTGCGCACCCAAGAGCATGCAGTTATTACTCTTTTGAACTTGTCTATTTGTGAGGAAAATAAAGAGTGCATCATGGCTTCTGAGGCTGTTCCTGGGATCCTTCACGTGCTCAAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGTGGTGGATGATTACAAAGTGGCAATCAGTGCATCTGGAGCAATCCCAGCGCTAGTTACACTTTTATGCAAGGGTAGTCAAAGAGGGAAGGCGGATGCTGCAACGGCACTATTCAATCTGTGTTTATATCAAGTGAACAAGGGAAGGACCGTCAGGGCTGGTGTTGTGCCCAAGTTGATGGAACTACTAACAGAACCTCGTCAGGAAATGATGGATGAGGCATTGGCAATTATGGCAGTACTAGCTAGCCACCCTGATGGAAAAGCAGCAATTGGATCTTTGAATGCTTCGCCCACTTTGGTAGATTTAGTTAGTCGTGGATCTCCTCGGAACAAAGAGAATGCAACTGCTGTGCTGGTGCACCTCTGTAGTGTAGATCCCCATTATCTGTCACTTGGGGTGATTAACCCTCTTCTGGACCAGGTAGAAAATGGCACAGAGAGGGGGATGCAAAAAGCTGCTCAGTTGCTTGAGCTTATAGGCAAATCTGCATA 860 0.4698 MVASDRSSEFIELDVLLSKLSSQDIEDRQYAAGKLRHLARQNGQNRLLIAEAGSIPLLVELLYATDLRTQEHAVITLLNLSICEENKECIMASEAVPGILHVLKNGSMEARENAAATFFSLSVVDDYKVAISASGAIPALVTLLCKGSQRGKADAATALFNLCLYQVNKGRTVRAGVVPKLMELLTEPRQEMMDEALAIMAVLASHPDGKAAIGSLNASPTLVDLVSRGSPRNKENATAVLVHLCSVDPHYLSLGVINPLLDQVENGTERGMQKAAQLLELIGKSA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01327 286 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 282 - -
Bva02g01327 286 SMART arm_5 206 246 IPR000225 GO:0005515
Bva02g01327 286 SMART arm_5 42 82 IPR000225 GO:0005515
Bva02g01327 286 SMART arm_5 165 205 IPR000225 GO:0005515
Bva02g01327 286 SMART arm_5 83 123 IPR000225 GO:0005515
Bva02g01327 286 SMART arm_5 124 164 IPR000225 GO:0005515
Bva02g01327 286 SUPERFAMILY ARM repeat 13 281 IPR016024 -
Bva02g01327 286 PANTHER U BOX DOMAIN-CONTAINING 3 282 - -
Bva02g01327 286 Pfam Armadillo/beta-catenin-like repeat 126 163 IPR000225 GO:0005515
Bva02g01327 286 Pfam Armadillo/beta-catenin-like repeat 44 81 IPR000225 GO:0005515
Bva02g01327 286 Gene3D - 150 284 IPR011989 -
Bva02g01327 286 Gene3D - 3 149 IPR011989 -
Bva02g01327 286 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 53 95 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01327 Bva-Chr2 17069902 17075729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01327 9 279 U-box Gene Family AT2G28830 61.733 8.82e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01327 - - jre:108998999 388.652