Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01309 ATGGTGCTGATACAACAGGAAGACGCTGAAGAGAAAAATGCGAATCCCCAGAAAAcacaagcttcaaaattgaccaattTTGATGATGATAGAGACGCTTCCGATGGATTCGAAACTGCCAGCGAAGCTGAACTCGGCAGCGACGATGACGATGCCGGCAGGGAGAATCAACAGAGGGAGCAGCCGCAGCAACAACAAGATGGTCATGGAGAGCAAGAGCACAAGGAACAGCAGCTAGAGCAAAGTGTTTCTCAGGAAAAAAGTGATTCTTCGGGGGATGCCTCAAACAATGAAGAAATGATACAGAATGCATTATCTCAAGCCAATGAAGCTAAGCTAGAAGGAAATAAACTGTTTGGAGAAGGGAAGTATGAGGAGGCACTGTCACAATATGAACGTGCTTTACAAGTCGTACCAGAGGTGCCTTCATCAGTGGAAATACGTTCAATATGCCATTCAAACCGGGGTGTATGCTTTCTGAAAATGGGTAAATATGACAACACAGTCAAAGAATGTACAAAAGCGTTAGAACTCAATCCTGGGTATGTTAAAGCTTTGGTGAAAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCCATAGCCGATATGAAAAAGATTTTAGAAATTGATCCCTCAAATGATCAAGCTAGAAAATCCGTTCGCCGACTGGAGCCCCTGGCTGCAGAGAAGCgtgaaaagatgaaagaagaaatgattgCTAAACTAAAAGATATGGGGAATTCTGTTTTGGGCCGCTTTGGGATGAGCACTGACAACTTCAAAGCTGTTAAAGATCCAAACACTGGTTCATATTCTATCTCATTCCAACGCTA 842 0.4121 MVLIQQEDAEEKNANPQKTQASKLTNFDDDRDASDGFETASEAELGSDDDDAGRENQQREQPQQQQDGHGEQEHKEQQLEQSVSQEKSDSSGDASNNEEMIQNALSQANEAKLEGNKLFGEGKYEEALSQYERALQVVPEVPSSVEIRSICHSNRGVCFLKMGKYDNTVKECTKALELNPGYVKALVKRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKSVRRLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSTDNFKAVKDPNTGSYSISFQR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01309 280 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515
Bva02g01309 280 Gene3D Tetratricopeptide repeat domain 66 246 IPR011990 GO:0005515
Bva02g01309 280 SUPERFAMILY TPR-like 100 226 IPR011990 GO:0005515
Bva02g01309 280 MobiDBLite consensus disorder prediction 24 38 - -
Bva02g01309 280 Pfam Tetratricopeptide repeat 184 216 IPR013105 -
Bva02g01309 280 Pfam Tetratricopeptide repeat 151 182 IPR001440 GO:0005515
Bva02g01309 280 MobiDBLite consensus disorder prediction 66 82 - -
Bva02g01309 280 SMART tpr_5 149 182 IPR019734 GO:0005515
Bva02g01309 280 SMART tpr_5 183 216 IPR019734 GO:0005515
Bva02g01309 280 SMART tpr_5 108 141 IPR019734 GO:0005515
Bva02g01309 280 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 54 280 - -
Bva02g01309 280 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 54 280 - -
Bva02g01309 280 MobiDBLite consensus disorder prediction 1 96 - -
Bva02g01309 280 Coils Coil 94 114 - -
Bva02g01309 280 ProSiteProfiles TPR repeat profile. 108 141 IPR019734 GO:0005515
Bva02g01309 280 ProSiteProfiles TPR repeat profile. 149 182 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01309 Bva-Chr2 16954162 16957691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01309 96 239 Calmodulin-binding Proteins AT3G25230 36.842 5.17e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01309 K24926 - gmx:100808386 365.155