Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01297 ATGCCAGCATTGATTTCAACACGGTTGCTTTTGCTTGTTGGAGAGTCATTGCCTATTAAAAGGTTCTTACCCACTTCTAGAACAGCTTGGTTGAACAGCAGTGTTCGTTTTCTGAGTCAGGTAGCTCCTGATCATGCTTCCCTCACTCTTTCGAGCCCTGGTTTCAAAGGTGAAACTGAAACcagttataaaacaaaatcaaataaactgAAGCACTGGAATTCCTCCTCTGAAGcctcaaagaaaaaagcaaaggCTATTGGAATAAATGAAGTTAAGGCAGTTGGAGCCAAAAAGACACAGCAAATAGAGTTGGGTCCATTTGCTGCAAAGTCATTTTCTGAACTTGGCCTCCCACCTTTGTTAATTGAGAGGTTAGAAAATGAGGGTTTCACAGTTCCAACAGAAGTCCAGTCTGCAGCAATTCCTACCATTTTGAAACATAACGATGTCGTAATTCAATCTTACACAGGATCAGGGAAAACATTGGCTTATCTCCTTCCTATACTCTCTGACATTGGTCCGCTAAGGAACAAACCTTCGGAAGGTGATATTGGTGCTGAACCTGGGAAGAAAATGGGAATAGAAGCAGTAGTTGTTGCACCCTCTAGAGAGCTGGGCATGCAAATAGTGAGGGAGTTTGAGAAGATACTAGGACCTGCTAACAAAAAAGTGGTTCAGCAGCTTGTGGGAGGTGCAAACCGATCTAGGCAAGAAGAAGctctcaagaaaaataaacctgCTATTGTTATTGGCACGCCTGGTAGAATAGCAGAGCTCAGTGCAGCTGGGAAGCTTCAAACCCATGGTTGTCGTTTTTTGGTCCTAGATGAAGTTGATGAACTCCTGTCATTTAACTTCAGGGAAGACATGCACAGGATACTGGAACATGTTGGTAGAAAATCAGGCGCAGCTATGCACGGACCAAAAAGCCCGATTGCAAGACGAGCTGAGCGGCAGATGATCATGGTATCTGCAACTGTGCCATTTTCTGTTGTAAGGGCAGTCCGGAACTGGGGGTGTGATCCACTTCTTGTCCAAGCCAAAAAAGTTACCCCACTTGAAACCATCTCCCCTTCCCAGCCCGTCAACTTGTCAAGGTCTGCTCCTAGTTCAAATCCTAACCCAAATATGGTTCAGGGAGCAATAGAGAGTCTACCTCCTGCATTGAAACATTATTATTGTGTCACGAAGTTACAACACAAAGTTGATACATTGAGAAGGTGTGTTCATGCATTAGATGCCAAATTTGTCATAGCTTTCATGAACCATACTAAGCAGCTGAAGGATGTTGTGTTCAAGCTAGAGGCCCGTGGGATGAAAGCTGCAGAGTTACATGGGGATCTTGGGAAGCTTGCTAGGTCAACAACTctgaaaaaattcaagaatggTGAGGTGAGAGTTTTGGtgacaaatgaattatcagcAAGGGGTTTAGATGTGGCAGAATGTGATCTTGTCGTCAATCTGGACTTACCCACAGACTCAATTCACTATGCACACAGAGCTGGGCGGACCGGTCGGCTTGGTAGGAATGGTACTGTGGTAACTATATGTGAAGAGCCTGAAGTGTTTGTCGTGAAGAAATTGCAGAAGCAGCTTGGAATATCAGTACCAAGCTGCGAGTTTACAGAGGGGAAGCTGCTTGTCAccgaagaagaaaaactaacCACAGTTAGAAGTTG 1685 0.4178 MPALISTRLLLLVGESLPIKRFLPTSRTAWLNSSVRFLSQVAPDHASLTLSSPGFKGETETSYKTKSNKLKHWNSSSEASKKKAKAIGINEVKAVGAKKTQQIELGPFAAKSFSELGLPPLLIERLENEGFTVPTEVQSAAIPTILKHNDVVIQSYTGSGKTLAYLLPILSDIGPLRNKPSEGDIGAEPGKKMGIEAVVVAPSRELGMQIVREFEKILGPANKKVVQQLVGGANRSRQEEALKKNKPAIVIGTPGRIAELSAAGKLQTHGCRFLVLDEVDELLSFNFREDMHRILEHVGRKSGAAMHGPKSPIARRAERQMIMVSATVPFSVVRAVRNWGCDPLLVQAKKVTPLETISPSQPVNLSRSAPSSNPNPNMVQGAIESLPPALKHYYCVTKLQHKVDTLRRCVHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEEPEVFVVKKLQKQLGISVPSCEFTEGKLLVTEEEKLTTVRS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01297 561 Gene3D - 387 547 IPR027417 -
Bva02g01297 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Bva02g01297 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Bva02g01297 561 MobiDBLite consensus disorder prediction 358 382 - -
Bva02g01297 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 530 IPR027417 -
Bva02g01297 561 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Bva02g01297 561 Gene3D - 55 348 IPR027417 -
Bva02g01297 561 SMART helicmild6 429 510 IPR001650 -
Bva02g01297 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 539 - -
Bva02g01297 561 SMART ultradead3 130 357 IPR014001 -
Bva02g01297 561 CDD DEADc 122 347 - -
Bva02g01297 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Bva02g01297 561 MobiDBLite consensus disorder prediction 358 380 - -
Bva02g01297 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 539 - -
Bva02g01297 561 CDD SF2_C_DEAD 390 519 - -
Bva02g01297 561 Pfam Helicase conserved C-terminal domain 411 510 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01297 Bva-Chr2 16897524 16900462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01297 110 538 Eukaryotic Initiation Factors Gene Family AT1G72730 26.682 6.08e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01297 - - qsu:112016002 820.846