Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01277 ATGGCCTTCGGATTTCGACTGTTCAGAAGTTCCAAAGTGATTTCTATTACAAATGATCTTAATGGTTCAATGGCCTTAATCAAAGGCAACTGCATATATGTTGCTCTTGAGTTTACATGCCCTGCAGCTCCATCAATGGTGCGCAATATCGGGGTTTTCTTCTTAACAGATGGGAGCATTAAGCATGTTTCTCTCAACCCCTCAGTCCAGATCGATGCTCCAACTCTTTGGTTTATGCCCAGCCTTTGTTGGAGCTGTTCAACTTCAGTGACACCCAAGCAAGAAAGTCCCATCCTATTTTTCTCGAGAAATTTTCTCGGCTTATATATACGTACTCGTTTTGGAGCATATCAGATTCTGTGGTTTCAGATCACTTTCGCTGTTTTCAATTGGTGGAAAGCTTCTGAGTCGGTGGTGCAAACTTTGATCCAGTTCACTGGGAATTATGAGGgaaattttgtctttgaaACAAGAGAAGATTTTTTGGAAATTGAGGCTGTGTATATGAAGTCGAGTATGGCTCAGAGTAACTGGGAAGCTGATAAAATGCTTGATGTTTATATTCAtgattatttgttaaaaagaaaactacacGCCTCTGCGAAAGCTTTCATGACTGAGGGGAAAGTTGCCACGGATCCTGTGGCAATTGATGCTCCTGGaggatttctttttgagtGGTGGTCGGTCTTTTGGGACATATTCATTGCAAGAACAAACGAGAAACATTCTGAGCCTGCTGCAGCTTATATTGAGACTCAGCAAATGAAGGCCAGAGAACAACTTCAGATGCAGCAATTGCAACTCATGCAGCAGCGCAATGTGCAGTTACAACGAAGAGATCCTGGTCATCCTGCTCTTGGCAGTTCCTTAAATGCAGTAAACTCTGAAGGAATGTTGGGACAGCCACCAGCAAGTGTGTTGGCCTTGAAAATGTATGAAGAACGAATGAAACACCCCCAACCAATGGAATCAGATGCATCTCCTGCTCTTCTTGATGCCAATAGGATAGCCCTTCTCAAATCAGCCACCAGTCATCAAGGTCAGTTGGTACAAGGTAATTCGGGGAATATGTCCACTGCATTGCAGCAAATTCAGGCACGGACTTCCCTTACCTCTGATATGAAAGGAGAAGTTAACTTAGGTGCCAGTCCAAAGAGTTTGCCTGTGGATTCATCAGTATATAGACAAGCAATTTTGCAGTCAAAATCTGGGATAGGCAGTGCAGGATTAAATCAAGGAGTTACGGGTCTTCCACTTAAGGGTTGGCCTCTAACTGGAATTGATCAACTACGGCCTAATTTAGGCGTACAAGTTCCAAAACCTAATTTAACAACACAAAAccaatttcttttgacatcACAACAGCACCAGGTCTTGGCACAGGTTCAGGCACAAAATAACCTAGGAAATTCTGCTAATTATGGTGATATGGATCCCCGTAGACTTAGTTCTCTGCCTCGAGGTAACTTGAATGCAAAGGATGGGCAGTCCACCAGGAATGAAGGATCGATGTGCTCCCAAGTGCAGTCTGGTTCCCCTAAGATGAAGATGGCACAGATGCAACACTCTTCATCTCAACAAGAGCAATTGCAGCAGCAATTACAGCAGAAtaacagaaaaaggaaacagcATTCTTCTTCTGGGGCTGCCAATAGCACTGGTACTGGAAACACAGTGGGTCCATCACCCAATTCGCCACCATCAACACACACACCTGGTGATGGAGTGAATACAGCAAGTAGCATGCACCAAGTTAACAGTGTGCCAAAGAGCTTGATGATGTATGGTACCGATGGGACGGGAGGccttgcttcttcttcaaatCTTCTGGAGGACATGGAACGATTCGGTGATGTTGGTACCTTAGAGGATAATGTTGAGTCCCTTCTATCAAATGATGGAGATGGTAGTAATCTCTATGGAACAGTTAAACCAAGTCCGGCTGAGCACCAAAAAGAGTCTGCGAAAGGTTTCACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACAACAGCAAAGTTACTTGCTGCCATTTCTCTTCAGATGGAAAGTTACTTGCTAGTGCTGGACATGAAAAGAAGGTTGTCCTCTGGAACATGGACAATTTACAGACGGAAAACACTCCTGAAGAACACAAATCAGTCATTACAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCAACAGCCTCAGTTGATAAAACTGTGCGACTATGGGATGCTGCCAATCCAGCCTATTGTATGAAAGAATATAGTGGGCGCAGTTCACCTGTTATGTCTCTTGATTTCCACCCTCAGAAGACTGACCTTTTCTGTTTCTGTGATGGTGACAATGGAATTCATTATTGGAATATTAACTCTGCCTCCTGCACCCGTGTATCTAAGGGAGGTAGTGCACAAGTGAGGTTTCAGCCACGACTAGGACGTCGACTGGCAGCTGCATCTGACAAAGTAGtgaatatatttgatgttGATACTGACAGTCAAATATTCTCATTACAAGGTCATCCTGAAATGGTGAACTATATTTGCTGGGATGCAAATGGAGATTTCCTGGCATCTGTGAGTCAGAACTGGGTAAAAATTTGGTCACTGACCAATGGAGAATGCATTCAGGAGCTCAACTCCAGTGGGAACCAGTTTCATTCCTGTGTTTTTCATCCAAGTTATTCTACTTTGTTGGTGATTGGAGGCCTTTCATCCTTAGAGCTATGGAACATGGCTGAAAACAAAAGCATGACAATCTCAGCACATGAGAATATAATCTCTGCTCTAGCACAATCTCCTGTCACTGGAATGGTGGCATCTGCAAGTCATGACAGCTCTGTGAAGTTAtggaaata 2849 0.4187 MAFGFRLFRSSKVISITNDLNGSMALIKGNCIYVALEFTCPAAPSMVRNIGVFFLTDGSIKHVSLNPSVQIDAPTLWFMPSLCWSCSTSVTPKQESPILFFSRNFLGLYIRTRFGAYQILWFQITFAVFNWWKASESVVQTLIQFTGNYEGNFVFETREDFLEIEAVYMKSSMAQSNWEADKMLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIETQQMKAREQLQMQQLQLMQQRNVQLQRRDPGHPALGSSLNAVNSEGMLGQPPASVLALKMYEERMKHPQPMESDASPALLDANRIALLKSATSHQGQLVQGNSGNMSTALQQIQARTSLTSDMKGEVNLGASPKSLPVDSSVYRQAILQSKSGIGSAGLNQGVTGLPLKGWPLTGIDQLRPNLGVQVPKPNLTTQNQFLLTSQQHQVLAQVQAQNNLGNSANYGDMDPRRLSSLPRGNLNAKDGQSTRNEGSMCSQVQSGSPKMKMAQMQHSSSQQEQLQQQLQQNNRKRKQHSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGVNTASSMHQVNSVPKSLMMYGTDGTGGLASSSNLLEDMERFGDVGTLEDNVESLLSNDGDGSNLYGTVKPSPAEHQKESAKGFTFAEFGCIRTRNNSKVTCCHFSSDGKLLASAGHEKKVVLWNMDNLQTENTPEEHKSVITDVRFRPNSSQLATASVDKTVRLWDAANPAYCMKEYSGRSSPVMSLDFHPQKTDLFCFCDGDNGIHYWNINSASCTRVSKGGSAQVRFQPRLGRRLAAASDKVVNIFDVDTDSQIFSLQGHPEMVNYICWDANGDFLASVSQNWVKIWSLTNGECIQELNSSGNQFHSCVFHPSYSTLLVIGGLSSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDSSVKLWK 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01277 949 MobiDBLite consensus disorder prediction 490 582 - -
Bva02g01277 949 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 174 949 IPR044716 GO:0003714
Bva02g01277 949 CDD WD40 672 949 - -
Bva02g01277 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 709 IPR001680 GO:0005515
Bva02g01277 949 SMART Lish 180 212 IPR006594 GO:0005515
Bva02g01277 949 MobiDBLite consensus disorder prediction 471 582 - -
Bva02g01277 949 SMART WD40_4 663 700 IPR001680 GO:0005515
Bva02g01277 949 SMART WD40_4 828 866 IPR001680 GO:0005515
Bva02g01277 949 SMART WD40_4 789 825 IPR001680 GO:0005515
Bva02g01277 949 SMART WD40_4 703 742 IPR001680 GO:0005515
Bva02g01277 949 SMART WD40_4 910 949 IPR001680 GO:0005515
Bva02g01277 949 SMART WD40_4 746 786 IPR001680 GO:0005515
Bva02g01277 949 SMART WD40_4 869 908 IPR001680 GO:0005515
Bva02g01277 949 Coils Coil 521 548 - -
Bva02g01277 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 917 949 - -
Bva02g01277 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 710 742 - -
Bva02g01277 949 Gene3D - 802 949 IPR015943 GO:0005515
Bva02g01277 949 ProSiteProfiles LIS1 homology (LisH) motif profile. 180 212 IPR006594 GO:0005515
Bva02g01277 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 710 742 IPR001680 GO:0005515
Bva02g01277 949 Pfam LisH 182 208 IPR006594 GO:0005515
Bva02g01277 949 SUPERFAMILY WD40 repeat-like 671 949 IPR036322 GO:0005515
Bva02g01277 949 Gene3D - 649 801 IPR015943 GO:0005515
Bva02g01277 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 917 949 IPR001680 GO:0005515
Bva02g01277 949 Pfam WD domain, G-beta repeat 672 700 IPR001680 GO:0005515
Bva02g01277 949 Pfam WD domain, G-beta repeat 913 949 IPR001680 GO:0005515
Bva02g01277 949 Pfam WD domain, G-beta repeat 709 742 IPR001680 GO:0005515
Bva02g01277 949 Pfam WD domain, G-beta repeat 832 866 IPR001680 GO:0005515
Bva02g01277 949 PRINTS G protein beta WD-40 repeat signature 729 743 IPR020472 -
Bva02g01277 949 PRINTS G protein beta WD-40 repeat signature 936 949 IPR020472 -
Bva02g01277 949 PRINTS G protein beta WD-40 repeat signature 687 701 IPR020472 -
Bva02g01277 949 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 174 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01277 Bva-Chr2 16785441 16796382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01277 686 934 U-box Gene Family AT2G33340 26.744 7.58e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bva02g01277 WD40 0.017 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01277 - - jre:109006035 1244.95