Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01276 ATGGAGAAGAATACAGTGgaaaataaagacaatatCGGCAGTGAAGgagaaggaggagaagaaCAAATATCCGATTCCTTTGTTTGCTGCGTTTGCTTGGATCTAATATACAAACCGATTGTACTATCTTGTGGTCACATATCCTGTTTCTGGTGTGTGTACAAATCAATGAATGGTCTACGTGAGTCCCGCTGTCCAATTTGCAGGCATCCATACTATCACTTTCCAACCATCTGTCAGATGCTTCACTTTTTGCTTCTAAAGCTGTATCCTGTTGCTTACACAAGAAGGGAAAATCAAACTCTAGaggaagaaaagaaatcggGCGATTACTCACCTCAGTTTGATGCTGATGCATGTGGATCCCTAGCTAAATATCTCTATCCAGGCAGTTCATCTTCCTGCTCTATCATAACTTCAGAGTCCAACTCATGTCCAACATCTTTATCTAGTAGCAGCATGGAAACTTCTGTGCATGAGCAATCAGAGTCTGCTTCGCATGAGCATGATAAAGACACTGTCGATTGTGAACATACTTCTGATGGAACAATTGTAGCAGTTGGGACTCTGAGTCCTTctgttaaaggaaaaaaatttcctcaGAATGAGCAACATGGTCAGCAGAAGATTTCAGTTGCAGATTTGATGTGTACAGCATGCAAGCAATTGCTTTTTAATCCTATAGTTCTTAACTGCGGTCATGTGTATTGTGAATCTTGCATCATCAGCTCAGCTGATAAAGTGCTGAGATGTCAAGTTTGTCAAACTCCACATCCAAGAGGATGTCCAAAAGTCTGTTTGGAGCTTGTCCATTTTTTGGAGGAACAACTTCCTGAAGAATATGCACGACGAAGAGATGCTGTTCAACTAAGACAAATCAATGTCCAACCTGAGTACCCTTCTTCCCGTTTACTGGATAAGgggagagaaggagaaaatgtaGCATGTCGGTCTGATCCTCGCTTGAATGTTCACGTAGGAGTTGGTTGTGATTTTTGCGGGATGTATCCAGTAATTGGGGATAGATATAAATGCAAAGACTGCAAGGAGAGAGTGGGCTTTGATCTTTGCAGCAATTGCTATAACTCGAGGTTGAAGCTTCCGGGCCGGTTCAATCAGCAGCATACCTCAGAACACAAGTTTGAGCTTATAAAAACCAATATCATTCATAATATAATGCTTAGGCTGGGTAATGGCCAGTCTGTGGAAGCTTCAAGTGATCATATCGCTCTGGATAACTTAGAAATGATATATGAAGAACCCTCTTTGTTTGGTGATGGAGAAGATGATCAGCATGGCTCAGGAGCACCCCATCAAAATATTTA 1325 0.3887 MEKNTVENKDNIGSEGEGGEEQISDSFVCCVCLDLIYKPIVLSCGHISCFWCVYKSMNGLRESRCPICRHPYYHFPTICQMLHFLLLKLYPVAYTRRENQTLEEEKKSGDYSPQFDADACGSLAKYLYPGSSSSCSIITSESNSCPTSLSSSSMETSVHEQSESASHEHDKDTVDCEHTSDGTIVAVGTLSPSVKGKKFPQNEQHGQQKISVADLMCTACKQLLFNPIVLNCGHVYCESCIISSADKVLRCQVCQTPHPRGCPKVCLELVHFLEEQLPEEYARRRDAVQLRQINVQPEYPSSRLLDKGREGENVACRSDPRLNVHVGVGCDFCGMYPVIGDRYKCKDCKERVGFDLCSNCYNSRLKLPGRFNQQHTSEHKFELIKTNIIHNIMLRLGNGQSVEASSDHIALDNLEMIYEEPSLFGDGEDDQHGSGAPHQNI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01276 441 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Bva02g01276 441 ProSiteProfiles Zinc finger RING-type profile. 217 255 IPR001841 -
Bva02g01276 441 Pfam Zinc finger, ZZ type 325 364 IPR000433 GO:0008270
Bva02g01276 441 Pfam RING-type zinc-finger 217 244 IPR027370 -
Bva02g01276 441 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Bva02g01276 441 SMART ring_2 217 254 IPR001841 -
Bva02g01276 441 SMART ring_2 29 68 IPR001841 -
Bva02g01276 441 MobiDBLite consensus disorder prediction 1 20 - -
Bva02g01276 441 ProSiteProfiles Zinc finger ZZ-type profile. 325 389 IPR000433 GO:0008270
Bva02g01276 441 PANTHER UNCHARACTERIZED 14 431 - -
Bva02g01276 441 SMART zz_5 324 371 IPR000433 GO:0008270
Bva02g01276 441 MobiDBLite consensus disorder prediction 1 16 - -
Bva02g01276 441 MobiDBLite consensus disorder prediction 146 176 - -
Bva02g01276 441 CDD RING-HC 29 68 - -
Bva02g01276 441 MobiDBLite consensus disorder prediction 161 176 - -
Bva02g01276 441 Pfam Zinc finger, C3HC4 type (RING finger) 28 72 - -
Bva02g01276 441 SUPERFAMILY RING/U-box 213 277 - -
Bva02g01276 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 95 IPR013083 -
Bva02g01276 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 301 IPR013083 -
Bva02g01276 441 SUPERFAMILY RING/U-box 317 386 - -
Bva02g01276 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 14 431 - -
Bva02g01276 441 MobiDBLite consensus disorder prediction 146 160 - -
Bva02g01276 441 Gene3D - 319 384 IPR043145 -
Bva02g01276 441 SUPERFAMILY RING/U-box 22 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01276 Bva-Chr2 16777791 16783862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01276 1 69 C3H Transcription Factor Family AT1G74990 35.714 2.64e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01276 - - gmx:100782681 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01276 02 16777791 16783862 Bva02g01276 02 16777791 16783862 ECH