Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva02g01261 | ATGGTTTCAGGCTCTGGCATCTGCGCAAAGAGGGTGGTGGTCGACGCCCGCCACCACATGCTGGGTCGTCTTGCTTCAATCGTAGCCAAAGAGCTTCTTAATGGCCAGAAGGTTGTCGTTGTTAGGTGCGAGGAGATTTGCATCTCTGGTGGTTTGGTTAGGCAGAAGATGAAGTACATGAGATTTCTTCGCAAGAGGATGAACACTAAGCCTTCTCATGGTCCCATTCACTTCCGAGCTCCGGGGAAGATCTTCTGGCGCACTGTTCGCGGAATGATTCCACACAAGACCAAGCGTGGCGCAGCTGCACTTGAACGTCTCAAGGTTTTTGAGGGCATTCCTCCTCCATATGACAAGATGAAGAGGATGGTTGTCCCTGATGCATTGAAGGTGTTGAGGCTACAGAAGGGTCACAAATTCTGCCTCCTGGGCAGATTGTCTTCAGAGGTTGGATGGAACTACTACGATACCATCAGGGAGctggaaaagaagagaaaggagagagCCCAAGTTTCTTATGAAAGGAAGAAGCAGCTCAACAAACTTAGGGTTCAGGCTGAGAAGATTGCTGAGGAAAAGCTTGGTTCCCAACTGGACATTCTTGCTCCGGTTAAGTATTG | 620 | 0.4774 | MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPGKIFWRTVRGMIPHKTKRGAAALERLKVFEGIPPPYDKMKRMVVPDALKVLRLQKGHKFCLLGRLSSEVGWNYYDTIRELEKKRKERAQVSYERKKQLNKLRVQAEKIAEEKLGSQLDILAPVKY | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva02g01261 | 206 | Hamap | 50S ribosomal protein L13 [rplM]. | 11 | 135 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Bva02g01261 | 206 | TIGRFAM | L13_A_E: ribosomal protein uL13 | 12 | 154 | IPR005755 | GO:0003735|GO:0006412|GO:0015934 | |
| Bva02g01261 | 206 | PANTHER | 60S RIBOSOMAL PROTEIN L13A-4 | 1 | 206 | - | - | |
| Bva02g01261 | 206 | ProSitePatterns | Ribosomal protein L13 signature. | 89 | 112 | IPR023563 | GO:0003735|GO:0005840|GO:0006412 | |
| Bva02g01261 | 206 | Gene3D | - | 156 | 206 | - | - | |
| Bva02g01261 | 206 | Gene3D | Ribosomal protein L13 | 8 | 154 | IPR036899 | GO:0003735|GO:0005840|GO:0006412 | |
| Bva02g01261 | 206 | Pfam | Ribosomal protein L13 | 10 | 115 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Bva02g01261 | 206 | CDD | Ribosomal_L13 | 12 | 113 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Bva02g01261 | 206 | SUPERFAMILY | Ribosomal protein L13 | 12 | 154 | IPR036899 | GO:0003735|GO:0005840|GO:0006412 | |
| Bva02g01261 | 206 | PANTHER | RIBOSOMAL PROTEIN L13 | 1 | 206 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva02g01261 | Bva-Chr2 | 16686020 | 16687786 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva02g01261 | 1 | 206 | Cytoplasmic Ribosomal Protein Gene Family | AT5G48760 | 89.806 | 6.67e-141 | 390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva02g01261 | K02872 | - | gmx:100813340 | 392.119 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva02g01261 | 02 | 16686020 | 16687786 | Bva02g01261 | 02 | 16686020 | 16687786 | ECH |