Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01241 ATGCCAGCGGTGGAAACTAGCCGAAAATTAGCCGGCTTGACCCTCGACGACATATTAGCTAACCAGAAAAGAGAAGCGGAGCCATCGCAACCCTGTGAGCCGAGCCAACGAACACTTATCGACGTTATCCGAGAGGACGAATCCATtaagaaggacaaaaagaCTTGGAAAACCTTCAAGGACAAGCTTCGGCTCAAGCGTGCCGGATCGGCTTGGACCTCTTCCATCCATATTCCAGCTTCGGATATCCCTATTCCTAGACATTCTAAAAGCATAATCCGTTCCCAACTCTCGCATCGTAAAACAGTTCGACCAGCCAACTCGGCCATGTCAACTCATCCCATGGATTCCCACCACGTCGGAGACTTAGACCCAACGGATCCGGATTTGGGTATTATAGCCCGACCCCAGTTCGGGCGCGGGGTCTCTTCTCGTTACGAAGGTGATCCCACCGAGAACAAACTCAAACCCTCAATGTCACGCCGCAACTCCACGCGCATGGTGTCGCGTACCGAGTCGAGCCGCCGAGAGCGCGCGGTGACTTTCCGGGAGCCCTACGACAGCGACGAGGGCGGATCCTCCGACGACGACGACGAGCAGGATTTGAGAGACCCATTAAGAGGAGTTAGAACTTTATCGGCCAGAGAGGCGGTGGCAGCTCAGGAGGCGGCGGAAGCAGCAGCTGCGGCAGCGGCAGAGGAGGAGGCAGAGGAGGCAGGCGAAGGGGACAACGCTGCGGAGCCGGTGAAAATGTCGCTGATGGATCTGCTGGAGGAGACTGACAGGCAAATGGGGTTAGAGGGGTCGAGGTACACCTTCGGAGATGATTGGGATGAATACGAGGacgaagaggaagaggaatcggaggaagaagaagaagggggCGTGGAGTACACTTGCTGCGTGTGTATGGTGAAGCATAGAGGTTCGGCTTTTATACCGTGTGGCCACACGTTTTGCAGGCTGTGTTCAAAGGAGCTGTGGGTCAGCAGGGGACATTGCCCCCTATGCAACAACTTTGTTGTGGAAATTCTTGACGttttttg 1046 0.522 MPAVETSRKLAGLTLDDILANQKREAEPSQPCEPSQRTLIDVIREDESIKKDKKTWKTFKDKLRLKRAGSAWTSSIHIPASDIPIPRHSKSIIRSQLSHRKTVRPANSAMSTHPMDSHHVGDLDPTDPDLGIIARPQFGRGVSSRYEGDPTENKLKPSMSRRNSTRMVSRTESSRRERAVTFREPYDSDEGGSSDDDDEQDLRDPLRGVRTLSAREAVAAQEAAEAAAAAAAEEEAEEAGEGDNAAEPVKMSLMDLLEETDRQMGLEGSRYTFGDDWDEYEDEEEEESEEEEEGGVEYTCCVCMVKHRGSAFIPCGHTFCRLCSKELWVSRGHCPLCNNFVVEILDVF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01241 348 MobiDBLite consensus disorder prediction 168 189 - -
Bva02g01241 348 Pfam Zinc finger, C3HC4 type (RING finger) 297 340 - -
Bva02g01241 348 MobiDBLite consensus disorder prediction 97 114 - -
Bva02g01241 348 CDD RING-HC 300 337 - -
Bva02g01241 348 ProSiteProfiles Zinc finger RING-type profile. 300 338 IPR001841 -
Bva02g01241 348 PANTHER OS01G0917900 PROTEIN 6 348 - -
Bva02g01241 348 MobiDBLite consensus disorder prediction 97 203 - -
Bva02g01241 348 MobiDBLite consensus disorder prediction 268 292 - -
Bva02g01241 348 MobiDBLite consensus disorder prediction 224 248 - -
Bva02g01241 348 SMART ring_2 300 337 IPR001841 -
Bva02g01241 348 PANTHER OS01G0917900 PROTEIN 6 348 - -
Bva02g01241 348 Coils Coil 217 237 - -
Bva02g01241 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Bva02g01241 348 SUPERFAMILY RING/U-box 299 344 - -
Bva02g01241 348 MobiDBLite consensus disorder prediction 276 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01241 Bva-Chr2 16510857 16513011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01241 7 348 C3H Transcription Factor Family AT3G07120 38.947 1.54e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01241 - - gmx:100776257 288.115