Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01210 ATGGGCCTTTCTTCTCAGAAACCTTCCCGATTTCATCCAATTTTATCTCGAAGTTGCGATTTGAGGTTTGATAACTTGGATTGGGGAATATTTTACAAGATGAGCTCTAGGGCAGTCAGGGGGACTGCTGTCAGAAGTTACAGGCGGAGGAAGACAGCCTTGGACTTGGACCTTAACCGTGTCCCACCAGGTGAAAATCGGGAGCTAGAGGGACCATCCAATCAATTGGCACCTCAAGTTGTTGAAACTGGCCCGCAACCACAGTCTCTTCAGCCTGCAATGATTGATGTGGAGGACATTGATGATGATGTTGTTGAATCTACTCCCAGGGCCTTTGCTGAGGCCAAAAACAATTCAAGAAGAAATCGGGGGAGGATTGTAGTTGATTTGGTTAATTCAGAAGATCGAGTTCGGGTGAACAATAATAATCACAACAAACGCCGAAGAGATTCTGCAAGTGAAGCTAATAATtgtgaaatttatataaacttgGAAAGCAGTAGCTGTTCTATGAGGGATTATGTTAAAATGGTGCCTGAACCACCAAAGGAGCCTGTTTTTAGCTGCCCCATTTGCATGGGCCCGTTGGTTGAAGAAACCTCAACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATTAAGGCTGCAATAAGTGTACAGAGTAAATGTCCGACCTGTAGGAAGAAGGTTACCGCCAAAGAGCTTATTAGGGTGTTTCTCCCTTCAACCAGTTG 734 0.436 MGLSSQKPSRFHPILSRSCDLRFDNLDWGIFYKMSSRAVRGTAVRSYRRRKTALDLDLNRVPPGENRELEGPSNQLAPQVVETGPQPQSLQPAMIDVEDIDDDVVESTPRAFAEAKNNSRRNRGRIVVDLVNSEDRVRVNNNNHNKRRRDSASEANNCEIYINLESSSCSMRDYVKMVPEPPKEPVFSCPICMGPLVEETSTRCGHIFCKNCIKAAISVQSKCPTCRKKVTAKELIRVFLPSTS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01210 244 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Bva02g01210 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 243 IPR013083 -
Bva02g01210 244 PANTHER ELFLESS, ISOFORM B 34 244 - -
Bva02g01210 244 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Bva02g01210 244 SUPERFAMILY RING/U-box 188 233 - -
Bva02g01210 244 SMART ring_2 189 226 IPR001841 -
Bva02g01210 244 Pfam Zinc finger, C3HC4 type (RING finger) 189 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01210 Bva-Chr2 16326966 16332357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01210 45 243 C3H Transcription Factor Family AT5G48655 51.980 1.32e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01210 K22651 - gmx:100792853 268.085