Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01184 ATGACGTCTTCTGAGCAGCAAGCCCAAGCCATAGCCACTCCTGCAGCTATTGTTGTAGGTAATGCCTTTGTTGATCAGTACTACCGTATGTTGCATGAAAGCCCCGAGCACGTGCATCGGTTTTACCATGAAGATAGTAAGCTAGGTCGCGTTGAGAAAGATGGTTTGATGGGTATTGCCACAACATTGCAAGGAATTAACGAGAAGATACTATTGCTGGGTTATTCTGAATTCAATTCAGAGATCATATCTGTGGATGCACAAGAATCTTATGGTGGGGGAGTCCTCGTCTTGGTCACTGGTTTTATGACTGGAAAGGACGTTGTGAGACGGAAATTTACACaaagtttctttcttgcacCTCAGGACAAGGGATACTTTGTTTTGAATGATGTTTTCAGATATGTAGACGAAAATGAAATCCAAGGGTCTACTGAGGATGTTGAATCTCCAGTAACTCCTGACCAGGATCCTTCTGTCCATGTCCCTGAGGCAGGGGACAAGAAAGATGAGGATGTTGATGGGGAGGAAGTGTACAACACTGAGAATGGGAGAGCTTCAATTGGAGAAGAGGAACAACCTGTGCCTGAGGTTGTTGATGAAATTCCTGATGATTCACAGATGGTGACTGGATCTACATCTAAAATTGAAGAAGTTCGCAAGAAGTCATATGCCTCTATTGTTAAAGTCATGAAGGAGAGTGCAACACCATCATCCACACAGACGGCTTCCCCAGTGAAATCTGCCCCAAAGAGCCAAGAGCAGCAGGTGATTACTGCACCTTCACCACCTAATGTGTCTGAAGCCACTGGTTCTACTGCAAATTCTAATGGAAGTGGAAACAATCAAGAATCTGAAGCTGAAGGTTATTCTATTTACATGAAAGGTCTGCCATCAAATGCCACAACTTTCCTACTAGAGAATGAGTttaagaagtttgggactatTAAGAGTGGTGGTATCCAAGTCAGGAGCCAGAAGGGATTTTGCTTTGGCTTTGTGGAGTTTGAAGAGGCAAGTGCTGCACAAAGTGCAATTGAGGCTTCGCCAATTATAATCAATGGGCGTTCTGTTGttattgaagaaaagaagtcAACAAATAGAGGGAATAGCAGGGGACGATTCTCCTCTGGAAGAGGGGCAGGATTCAGGAATGAGGGTGCAAGATCACGTGGAAACTATGGAAATGGCCGAGGCTACGATCGTGGTGACTATAATGGCAGGGGTGATTTTGGATATAGGAATGGCAATCGTGGTGGAGGGTTTTCAAACCGTGCAGGTGATGGGTATCATAGAAATGATAGAATGGGAGGCAATGGTGGCCGTGTAAATCACACTGGTGGGTTCGCTGTTAATTCAACAGCCAAAAATATGCCTGTTCGTGTACCTGCTACTGCTTG 1400 0.4329 MTSSEQQAQAIATPAAIVVGNAFVDQYYRMLHESPEHVHRFYHEDSKLGRVEKDGLMGIATTLQGINEKILLLGYSEFNSEIISVDAQESYGGGVLVLVTGFMTGKDVVRRKFTQSFFLAPQDKGYFVLNDVFRYVDENEIQGSTEDVESPVTPDQDPSVHVPEAGDKKDEDVDGEEVYNTENGRASIGEEEQPVPEVVDEIPDDSQMVTGSTSKIEEVRKKSYASIVKVMKESATPSSTQTASPVKSAPKSQEQQVITAPSPPNVSEATGSTANSNGSGNNQESEAEGYSIYMKGLPSNATTFLLENEFKKFGTIKSGGIQVRSQKGFCFGFVEFEEASAAQSAIEASPIIINGRSVVIEEKKSTNRGNSRGRFSSGRGAGFRNEGARSRGNYGNGRGYDRGDYNGRGDFGYRNGNRGGGFSNRAGDGYHRNDRMGGNGGRVNHTGGFAVNSTAKNMPVRVPATA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01184 466 MobiDBLite consensus disorder prediction 143 195 - -
Bva02g01184 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 365 IPR000504 GO:0003723
Bva02g01184 466 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 12 462 IPR039539 -
Bva02g01184 466 SUPERFAMILY NTF2-like 16 136 IPR032710 -
Bva02g01184 466 SUPERFAMILY RNA-binding domain, RBD 281 397 IPR035979 GO:0003676
Bva02g01184 466 MobiDBLite consensus disorder prediction 232 287 - -
Bva02g01184 466 Gene3D - 269 373 IPR012677 -
Bva02g01184 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 356 IPR000504 GO:0003723
Bva02g01184 466 SMART rrm1_1 291 361 IPR000504 GO:0003723
Bva02g01184 466 ProSiteProfiles Nuclear transport factor 2 domain profile. 19 135 IPR018222 -
Bva02g01184 466 PANTHER G3BP-LIKE PROTEIN ISOFORM X1-RELATED 12 462 - -
Bva02g01184 466 Pfam Nuclear transport factor 2 (NTF2) domain 19 135 IPR002075 -
Bva02g01184 466 MobiDBLite consensus disorder prediction 364 466 - -
Bva02g01184 466 CDD RRM_SF 292 361 - -
Bva02g01184 466 MobiDBLite consensus disorder prediction 161 179 - -
Bva02g01184 466 Gene3D - 8 139 - -
Bva02g01184 466 CDD NTF2 19 137 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01184 Bva-Chr2 16063722 16068239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01184 274 368 Eukaryotic Initiation Factors Gene Family AT2G36660 33.673 9.25e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01184 K24983 - gmx:100800392 500.745