Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01086 atgACTAAGCAAGTAGCCATTCTTCTAGCTTTGATGGTTTTCCTCAACAAAATTTCTGACACTGAAATGAGCAAATATATACCAACCAGACCTGATGTTGTGAGTATTGGGGcacttttctatttcaattcTACTATTGGCATGGTTGCGAAAGTAGCAATAGCAGCAGCAGTTGATGATATAAATTCTAGTCCAAAGGTTCTTAATGGAACAAAGCTAAAAATTTCAGTGCAGGATGCTAATCAAGATGGCTTTCTAGGCATAATCAAGGCTCTAAGGTTAATGGAGAATGACACAATGGCTATAATTGGCCCTGAGTTTTCTGTCTCAGCTCACACAATTTCACAGGTTGCAAATGAGCTCCAGGTCcctcttttatcattttcggCCACAGATCCCACCCTTTCTTCCTTAGAGTTCCCATACTTTGTTAGAACAACACAGAGTGATCTCTGCCAGATGTCAGCAATAGCAGATATTGTAGATTACTATGAGTGGAGAGATGTCATAGCAATATATGTTGAGGATGATTATGGGAGAAATGGGGTTGCTGTTTTAGTGGATAAGCTAGCTGAGAAACGATGCAAGATATTGTACAAAGCACCTCTTAGTCCTAACATGAGCCGGTTTGACATAATTCATATTCTGAGTAAGATAGCATTAATGGAGTCTAGAGTTTTGATCCTTCACGCGTATGCAGATTTGGGTCTACAAGTTTTTGATGTTGCAAAAGACTTTGGCATGTTGAGTGCTGGTTTTGTTTGGATAGCCACTGACTGGCTTTCCACTGAACTGGATGCTGCTTCTGTTCTTGCTAGAAGGGCCATTGATGGCATTCAAGGTGTTCTTACGCTGCGTATATACACCCCAGATTctgaaattaaaaggaaacttGTTTCCAGGTGGGAAAGATTAACTGATAGAAAATCAGCTAGTGGTTCTGTAGGATTGAATACATACGGTTTATATGCTTATGACACTGTATGGCTTCTGGCTCGAGCAATTGATGAGCTTCTAACTCAGGGAactcatatttcattttcaagtgATTCAGAGTTAACTCAACTAAATGGAAAgagtttgagttttaattcTGTGAGAATTTTTAATGAAGGAAACCTGTTGCTTAAGAGTATATTTAAGGTCAATTTGACAGGTGTGACAGGTAAGTTGAAGTGCAATTCAGATGGTTGTGTGGTTAATCCTGCATATGAAGTTATCAATGTCATTGGCACTGGCCCTAGGAAAATTGGTTATTGGTCCAATTATTCAGGATTATCAGTGGTGCCTCCAGAAAGTCAGTACTCAAAGCCTAATGATTCTTCCAGCTCCAGCCAACAACTACATGGAGTTGTCTGGCCTGGACAAACAACAGTGAAGCCTCGCGGGTGGGTATATTCAAATGATGGAAACCCTTTGAGAATTGGTATCCCAAAGccttttttcaaagaaattctTTATCAGGTAGAAGGCACTGTTACATATTCTGGCTTCTGCATTGATGTGTTTAGTGCTGCACTGGACTTGTTGCCATACAGAATCCCATATCAGATGTTTCCATCCATTCATGGTCAGCATTACCCAACTGGCACGGAGCTTCTGCACATGGTCCAAATGGGGGTCTATGATGCTGTGGTGGGTGACTTTTCAGTCACCACTGACCGCATGCGAATGGTGGATTTCACTCAGCCATATATAGAGTCTGGTCTGGTTGTTGTGGCTCCCATCAGGAAGTTAAACTCAAGTACCTGGGCCTTTTTGAGACCCTTTACTCCAATGCTGTGGTTCAGCTTTTCAACCTTGTCCTCTTCTCAGAGAGAAAAGACAGTGACCAATCTTAGTCGCTTTGTGCTTATAGTTTGGCTATTTGTGGTGCTAATACTGAACTCAACCTATACAGCAAGTTTGTCCTCAATCCTTACAGTGCAGCAGCTATCTTCTAATATCAAAGGAATTGAGAGTTTACTGGCAAGCAACGACCCCATTGGTTACCGAAGAGGTTCATTTTCTGGGAATTACTTAGTTAATGAACTAAATATACAGCGTTCAAGGCTTGTTCCTCTGAACTCACCAGAGGAGTTTGAAAGAGCTTTAATCAATGGTCCTGAGAAGGGTGGTGTTGCTGCATTGGTCGATGAACGTGTATATATGGAGCTTTTCCTTTCTACCAGATGTGAATTCAGCATAGTAGGCCAAGATTTCATGAAAATGGGCTGGGCATTTGCTTTTCAAAGGGATTCACCACTTGCGGTAGACATGTCAACTGCCATATTAATGCTCTCAGAGAATGGAGAACTCCAAAGGATTCGTGACAAATGGCTGAGACAAAGTGCTTGCATCACACAAGGTGGGAAGCAAGAATTAGAGCGCCTTCCACTTAAAAGCTTTCTTGGTCTATTTTTCATATGCGGATCAGCTTGCTTTCTTGCCCTCCTTGTGTTCTTTGTTCAGATGGTGCAGAAGTTTATCAAACATAACTCAAATGAGTCCCAATCCTCTACTTTGAGATCAGGGTCTTCAGTTCTTCGTTCGTTTGCCTCATTTcttgatgaaaaagaaatgagaaggtA 2570 0.3957 MTKQVAILLALMVFLNKISDTEMSKYIPTRPDVVSIGALFYFNSTIGMVAKVAIAAAVDDINSSPKVLNGTKLKISVQDANQDGFLGIIKALRLMENDTMAIIGPEFSVSAHTISQVANELQVPLLSFSATDPTLSSLEFPYFVRTTQSDLCQMSAIADIVDYYEWRDVIAIYVEDDYGRNGVAVLVDKLAEKRCKILYKAPLSPNMSRFDIIHILSKIALMESRVLILHAYADLGLQVFDVAKDFGMLSAGFVWIATDWLSTELDAASVLARRAIDGIQGVLTLRIYTPDSEIKRKLVSRWERLTDRKSASGSVGLNTYGLYAYDTVWLLARAIDELLTQGTHISFSSDSELTQLNGKSLSFNSVRIFNEGNLLLKSIFKVNLTGVTGKLKCNSDGCVVNPAYEVINVIGTGPRKIGYWSNYSGLSVVPPESQYSKPNDSSSSSQQLHGVVWPGQTTVKPRGWVYSNDGNPLRIGIPKPFFKEILYQVEGTVTYSGFCIDVFSAALDLLPYRIPYQMFPSIHGQHYPTGTELLHMVQMGVYDAVVGDFSVTTDRMRMVDFTQPYIESGLVVVAPIRKLNSSTWAFLRPFTPMLWFSFSTLSSSQREKTVTNLSRFVLIVWLFVVLILNSTYTASLSSILTVQQLSSNIKGIESLLASNDPIGYRRGSFSGNYLVNELNIQRSRLVPLNSPEEFERALINGPEKGGVAALVDERVYMELFLSTRCEFSIVGQDFMKMGWAFAFQRDSPLAVDMSTAILMLSENGELQRIRDKWLRQSACITQGGKQELERLPLKSFLGLFFICGSACFLALLVFFVQMVQKFIKHNSNESQSSTLRSGSSVLRSFASFLDEKEMRR 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01086 856 PIRSF IGluLR_plant 1 595 IPR017103 -
Bva02g01086 856 PIRSF IGluLR_plant 591 856 IPR017103 -
Bva02g01086 856 Pfam Ligand-gated ion channel 776 806 IPR001320 GO:0015276|GO:0016020
Bva02g01086 856 Gene3D - 708 736 - -
Bva02g01086 856 Gene3D - 737 773 - -
Bva02g01086 856 PANTHER GLUTAMATE RECEPTOR 3.6 16 596 - -
Bva02g01086 856 PANTHER GLUTAMATE RECEPTOR 3.6 593 854 - -
Bva02g01086 856 CDD GluR_Plant 471 774 - -
Bva02g01086 856 SUPERFAMILY Periplasmic binding protein-like I 30 464 IPR028082 -
Bva02g01086 856 Gene3D - 585 663 - -
Bva02g01086 856 SUPERFAMILY Periplasmic binding protein-like II 450 776 - -
Bva02g01086 856 Gene3D - 149 426 - -
Bva02g01086 856 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 593 854 - -
Bva02g01086 856 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 596 - -
Bva02g01086 856 Gene3D - 467 584 - -
Bva02g01086 856 SMART GluR_14 474 776 IPR001320 GO:0015276|GO:0016020
Bva02g01086 856 Pfam Receptor family ligand binding region 52 411 IPR001828 -
Bva02g01086 856 Gene3D - 52 401 - -
Bva02g01086 856 Pfam Bacterial extracellular solute-binding proteins, family 3 494 775 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01086 Bva-Chr2 15101429 15106679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01086 8 853 Ion Channels AT3G51480 52.257 0.0 945
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01086 K05387 - qsu:112001927 1018.84