Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01085 ATGGAGAATGACACAATGGCTATAATTGGCCCTGAGTTTTCTGTCTCAGCTCACACAATTTCACAGGTTGCAAAAGAGCTCCGGGTCcctcttttatcattttcggCCACAGATCCCACCCTTTCTTCCTTAGAGTTCGCATACTTCGTTAGAACAACACAGAGTGATCTCTGCCAGATGTCAGCAATAGCAGATATTGTAGATTACTATGAGTGGAGAGATGTCATAGCAATTTATGTTGAGGATGATTATGGGAGAAATGGGGTTGCTGTTTTAGTGGATAAGCTAGCTGAGAAACGATGCAAGATATTGTACAAAGCACCTCTTAGTCATAACATGAGCCGGTTTGACATAATTCATATTCTGAGTAAGATAGCATTAATGGAGTCTAGAGTTTTGATCCTTCACGCGTATGCAGATTTGGGTCTACAAGTTTTTGATGTTGCAAAAGACTTTGGCATGTTGAGTGCTGGTTTTGTTTGGATAGCCACTGACTGGCTTTCTACTGAACTGGATGCTGCTTTTGGTCTTGCTAGAAGTGTCATCGATGGCATTGAAGGTGTTCTTACGCTGCGTATATACACCCCAGATTctgaaattaaaaggaaatttgttTCCAGGTGGGAAAGATTAACTGATAGAAAATCAGCTAGTGGATCTGTAGGATTGAATACATACGGTTTATATGATTATGACACTGTATGGCTTCTGGCTCAAGCAATTGATGGGCTTCTAACTCAGGGAACtggtatttctttttcaagtgaTCCGGAGTTAACTCAACTAAATGGAAAGAGTTTGTGTTTTAATTCtgtaagaatttttaatgaaagaaacCTGTTGCTTAAGAGTATACTTAAGGTCAATTTGACAGGTGTAACAGGTAAGTTGAAGTGCAATTCAGATGGTTGTGTGGTTAATCCTGCGTATGAAGTTATCAATGTCATTGGCACTGGCCCTAGGAAAATTGGTTATTGGTCCAATTATTCAGGATTATCAGTGGTGCCTCCAGAAAGTCAGTACTCAAAGCCTAATGATTCTTCCTGCTCAAGCCAACAAGTACATGGAGTTGTCTGGCCTGGACAAACAACAGTGAAGCCTCGCGGGTGGGTATATGCAAATGAAGGAAAGCCTTTGAGAATTTCTTTCCGAAAGCCTCTTTTCAAAGAAATTCTTAATGAGGCAGAAGGCACTGGTACATATTATGGCTTCTGCATTGATGTGTTTAGTGCTGCACTGGACTTGTTGCCATACAGAATCCCATATCAGATGTTTCCATCCATTCATGGTCAGTATTACCCAAGTGGCACGGAGCTTCTGCACATGGTCCAAATGGGGGACTATGATGCTGCCGTGGGTCACTTTTCAATCACCACTGACCGCATGCGAATGGTGGATTTCACTCAGCCATATACAAAGTCTGGTCTGGTTGTTGTGGCTCCCATCAGGAAGTTAAACTCAAGTACCTGGGCCTTTTTGAGACCCTTTACTCCAATGCTGTGGTGTGTCACAGGAGAAAAGACAGCAGCCAATCTTAGTCGCTTTCTACTTATAGTTTGGCTATTTGTAGTGCTAATACTGAACTCAACCTATACAGCAAGTTTGTCCTCAATCCTTACAGTGGAGCAGCTATCTTCTAATATCAAAGGCATTGAGAGTTTACTGGCAAGCAACGTCCCCATCGGTTACCAAAGAGGTTCATTTTCTGGGAATTACTTAGTTAATGAACTAAACATACAGCGTTCAAGGCTTGTTCCTCTGAACTCACCAGAGGAGTTTGAAAAAGCTTTAATCAGTGGTCCTGAGAAGGGTGGTGTTGCCGCGTTGGTAGATGAACGTGTATATATGGAGCTTTTCCTTTCTACCAGATGTGAATTCAGCATAGTAGGCCAAGATTTCATGAAAATTGGCTGGGCATTTGCTTTTCCAAGGGATTCACCCCTTGCAGTAGACATGTCAACTGCCATATTGAAGCTCTCAGAGAATGGAGAACTCCAAAGGATTCGTGATAAATGGCTGAGACAAAGTGCTTGCATCACACAAGGTGGGAAGCAAGAATTAGAGCGCCTTCCACTTCAAAGGTTTCTTGGTCTATTTTTCATATGCGGATCAGCTTGCTTTCTTGCCCTCGTTGTGTTCTTTGTTGCACAAGTTTATCAAACATA 2165 0.4083 MENDTMAIIGPEFSVSAHTISQVAKELRVPLLSFSATDPTLSSLEFAYFVRTTQSDLCQMSAIADIVDYYEWRDVIAIYVEDDYGRNGVAVLVDKLAEKRCKILYKAPLSHNMSRFDIIHILSKIALMESRVLILHAYADLGLQVFDVAKDFGMLSAGFVWIATDWLSTELDAAFGLARSVIDGIEGVLTLRIYTPDSEIKRKFVSRWERLTDRKSASGSVGLNTYGLYDYDTVWLLAQAIDGLLTQGTGISFSSDPELTQLNGKSLCFNSVRIFNERNLLLKSILKVNLTGVTGKLKCNSDGCVVNPAYEVINVIGTGPRKIGYWSNYSGLSVVPPESQYSKPNDSSCSSQQVHGVVWPGQTTVKPRGWVYANEGKPLRISFRKPLFKEILNEAEGTGTYYGFCIDVFSAALDLLPYRIPYQMFPSIHGQYYPSGTELLHMVQMGDYDAAVGHFSITTDRMRMVDFTQPYTKSGLVVVAPIRKLNSSTWAFLRPFTPMLWCVTGEKTAANLSRFLLIVWLFVVLILNSTYTASLSSILTVEQLSSNIKGIESLLASNVPIGYQRGSFSGNYLVNELNIQRSRLVPLNSPEEFEKALISGPEKGGVAALVDERVYMELFLSTRCEFSIVGQDFMKIGWAFAFPRDSPLAVDMSTAILKLSENGELQRIRDKWLRQSACITQGGKQELERLPLQRFLGLFFICGSACFLALVVFFVAQVYQT 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01085 721 Pfam Ligand-gated ion channel 675 705 IPR001320 GO:0015276|GO:0016020
Bva02g01085 721 Gene3D - 340 506 - -
Bva02g01085 721 SUPERFAMILY Periplasmic binding protein-like I 3 370 IPR028082 -
Bva02g01085 721 Pfam Receptor family ligand binding region 4 317 IPR001828 -
Bva02g01085 721 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 505 - -
Bva02g01085 721 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 506 719 - -
Bva02g01085 721 Gene3D - 1 307 - -
Bva02g01085 721 Gene3D - 507 569 - -
Bva02g01085 721 SMART GluR_14 380 675 IPR001320 GO:0015276|GO:0016020
Bva02g01085 721 Gene3D - 55 332 - -
Bva02g01085 721 CDD GluR_Plant 377 673 - -
Bva02g01085 721 Gene3D - 608 635 - -
Bva02g01085 721 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bva02g01085 721 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bva02g01085 721 PRINTS Metabotropic glutamate GPCR signature 75 92 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bva02g01085 721 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bva02g01085 721 PANTHER GLUTAMATE RECEPTOR 1 505 - -
Bva02g01085 721 PANTHER GLUTAMATE RECEPTOR 506 719 - -
Bva02g01085 721 Gene3D - 636 672 - -
Bva02g01085 721 SUPERFAMILY Periplasmic binding protein-like II 357 675 - -
Bva02g01085 721 Pfam Bacterial extracellular solute-binding proteins, family 3 398 674 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01085 Bva-Chr2 15095846 15096623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01085 1 720 Ion Channels AT3G51480 51.958 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01085 K05387 - jre:108984269 880.167