Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01084 ATGAGCAAATATATACCAACCAGACCTGATGTTGTGAGTGTAGGGgcacttttctctttcaattctACTATTGGCAAGGTTGCAAAGGTAGCAATAGCAGCAGCAGTTGATGATATAAATTCTAGTCCAAACGTTCTTAATGGAACAAAGCTGAAAATTTCAGCGCAGGATGCTAATCAAGATGGCTTTCTAGGCATAATCAAGGCTCTAAGGTTAATGGAGAATGACACAATGGCTATAATTGGCCCTGACTTTTCTGTCTCAGCTCACACAATTTCACAGGTTGCAAATGAGCTCCAGGTCcctcttttatcattttcggCCACAGATCCCACCCTTTCTTCCTTAGAGTTCCCATACTTCGTTAGAACAACACAGAGTGATCTCTTCCAGATGGCAGCAATAGCAGATATTGTAGATTACTATGAGTGGAGAGATGTCATAGCAATTTATGTTGAGGATGATTATGGGAGAAATGGGGTTGCTGTTTTAGTGGATAAGCTGGCTGAGAAACGATGCAAGATATTGTACAAAGCACCTCTTAGTCCTAACATGAGCCGGTTTGACATAATTCATGTTCTGAATAAGATAGCATTAATGGAGTCTAGGGTTTTGATACTTCACGCATATGCAGATTTGGGTCTACAAGTTTTTGATGTTGCAAAAGACTTTGACATGATGAGTGCTGGTTTTGTTTGGATAGCCACTGACTGGCTTTCTACTGAACTGGATGCTGCTTCTGGTCTTGCTAGAAGGGCGATCGATGGCATTCAAGGTATTCTTACGCTGCGTGTATACACCCCagattctaaaattaaaaggaaacttGTTTCCAGGTGGAAAAGTTTAACTGATAGAAAATCAGCAAGTGGTTCAGTAGGATTGAACATATATGGTTTATATGCCTATGACACTGTATGGCTTCTGGCTCGAGCAATTGATGAGCTTCTAACTCAGGGAactcatatttcattttcaagtgATTCAAAGTTAACTCAACTAAATGGAAAGAGTTTGAGTTTTAATACTGTGAGAAGTTTTAATGAAGGAAACCTGTTGCTTAAGAGCATTTTTAAGGTCAAATTGACCGGTGTAACTGGTGAGATGAAGTGCAATTCAGATGATTGTGTGGTTAATCCTGCATATGAAGTTATCAATGTCATTGGTGCGCCTAGGAAAATTGGTTACTGGTCTAATTATTTAGGATTATCGGTGGTGCCTCCAGAAACTCAGCACTCAATGCCTAATGATACTTCCAGCTCCAGCCAACAGCTACATGGAGTTGTCTGGCCTGGACAAACAACGGTGAAGCCTCGAGGGTGGGTATACCCAAATGGTGCAAAACCTTTGAGAATTGGTATCCCAAAGccttttttcaaagaaattctTTATCAGGTAGAAGGCACTGGTACATATTCTGGCTTCTGCATTGATGTGTTTACTGCTGCACTAGACTTGTTGCCATATAGTTTCCCATATCAGTTTATTCCATATCGTCAGCATCTACCAAATTCGACTGAGCTCGTGCATATGGTCCAAATGGGGGTCTATGATGCTGTGGTAGGTGACATTTCAGTCACCACTAACCGCATGCGAATGGTGGATTTTACCCAGCCATATACAGAGTCTGGTCTGGTTGTTGTGGCACCCATCAGGAAATTAAACTCAAGCACCTGGGCCTTTTTAAGACCCTTTACTCCAATGATGTGGTGCGTCACAGGTTTATCTTTCCTCATTGTTGGAGTAGTTATCTGGATCTTGGAGCATAGGAGAAATGATGATTTTAGGGGACCTCCTAGGAAACAAGTTATCACTATATTATTGTTCAGCTTTTCAAACTTGTTCTCTTCTCAAAGAGAAAAGACACTGAGCAATCTTGGTCGCTTTCTGCTGATAATATGGCTATTTGTGGTGCTTATACTGAACTCAACCTACACAGCAAGTTTATCATCAATCCTTACAGCGGAGCAGCTATCTTCTACAACCAAACTCTCAAGCAACGACCCGATCGGTTTCCTTAGAGGTTCATTTTCTGAGAGTTACTTAGTTAATGAACTAAACATACAACGTTCAAGGCTTGTTCCTCTGAACTCACCAGAGGAGTATGAAAAAGCTTTAATCAGTGGTCCTGAGAAGGGTAGTGTTGCTGCATTGGTCGATGAACGTGTATATATGGAACTTTTCCTATCAACCAGATGTGAATTCAGCATAATAGGCCAAGATTTCATGAAAATTGGCTGGGCATTTGCTTTTCAAAGGGATTCAGCACTTGCAGTAGACATGTCAACTGCCATATTAAAGCTGTCAGAGAATGGAGAACTCCAAAGGATTCGTGACAAATGGCTGAGACGAAGTGCTTGCATCACCCAAGGTGGGAAACAAGAATTAGAGCGCCTTCCACTTAAAAGCTTTCTTGATCTATTTTTCATATGCGGATCAGCTTGCTTTCTTGCCCTCCTTATGTTCTTTGTTCAGATGGTGCACAAGTTTATCAAACATAACTCAAATGAGTCCCATTCTTCTACTTTGAGATCAGGATCTTCAATTCTTCGTTCGTTTGCCTCATTTcttgatgaaaaagaagaagtcatTGAAAGTAACTCAATGAGAAGGCAGATGGAGAATTCTTCTGTTGAACTTTG 2642 0.3936 MSKYIPTRPDVVSVGALFSFNSTIGKVAKVAIAAAVDDINSSPNVLNGTKLKISAQDANQDGFLGIIKALRLMENDTMAIIGPDFSVSAHTISQVANELQVPLLSFSATDPTLSSLEFPYFVRTTQSDLFQMAAIADIVDYYEWRDVIAIYVEDDYGRNGVAVLVDKLAEKRCKILYKAPLSPNMSRFDIIHVLNKIALMESRVLILHAYADLGLQVFDVAKDFDMMSAGFVWIATDWLSTELDAASGLARRAIDGIQGILTLRVYTPDSKIKRKLVSRWKSLTDRKSASGSVGLNIYGLYAYDTVWLLARAIDELLTQGTHISFSSDSKLTQLNGKSLSFNTVRSFNEGNLLLKSIFKVKLTGVTGEMKCNSDDCVVNPAYEVINVIGAPRKIGYWSNYLGLSVVPPETQHSMPNDTSSSSQQLHGVVWPGQTTVKPRGWVYPNGAKPLRIGIPKPFFKEILYQVEGTGTYSGFCIDVFTAALDLLPYSFPYQFIPYRQHLPNSTELVHMVQMGVYDAVVGDISVTTNRMRMVDFTQPYTESGLVVVAPIRKLNSSTWAFLRPFTPMMWCVTGLSFLIVGVVIWILEHRRNDDFRGPPRKQVITILLFSFSNLFSSQREKTLSNLGRFLLIIWLFVVLILNSTYTASLSSILTAEQLSSTTKLSSNDPIGFLRGSFSESYLVNELNIQRSRLVPLNSPEEYEKALISGPEKGSVAALVDERVYMELFLSTRCEFSIIGQDFMKIGWAFAFQRDSALAVDMSTAILKLSENGELQRIRDKWLRRSACITQGGKQELERLPLKSFLDLFFICGSACFLALLMFFVQMVHKFIKHNSNESHSSTLRSGSSILRSFASFLDEKEEVIESNSMRRQMENSSVEL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01084 880 SUPERFAMILY Periplasmic binding protein-like II 427 784 - -
Bva02g01084 880 PANTHER GLUTAMATE RECEPTOR 5 866 - -
Bva02g01084 880 Gene3D - 127 403 - -
Bva02g01084 880 SUPERFAMILY Periplasmic binding protein-like I 8 441 IPR028082 -
Bva02g01084 880 Gene3D - 558 682 - -
Bva02g01084 880 PIRSF IGluLR_plant 2 879 IPR017103 -
Bva02g01084 880 Gene3D - 30 379 - -
Bva02g01084 880 SMART GluR_14 451 784 IPR001320 GO:0015276|GO:0016020
Bva02g01084 880 Gene3D - 717 748 - -
Bva02g01084 880 Pfam Bacterial extracellular solute-binding proteins, family 3 468 782 IPR001638 -
Bva02g01084 880 Pfam Receptor family ligand binding region 30 388 IPR001828 -
Bva02g01084 880 Gene3D - 448 557 - -
Bva02g01084 880 Pfam Ligand-gated ion channel 783 814 IPR001320 GO:0015276|GO:0016020
Bva02g01084 880 CDD GluR_Plant 448 782 - -
Bva02g01084 880 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 5 866 - -
Bva02g01084 880 Gene3D - 749 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01084 Bva-Chr2 15079594 15089193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01084 1 877 Ion Channels AT3G51480 54.617 0.0 987
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01084 K05387 - tcc:18610633 1080.86