Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01082 ATGACCAAGCAAGTAGCCattcttttagttttgatAGTTTTCCTCAAATTTTCTGACACTGAAATGAGCAAAGAGATGCCAACCAGATCCAATGTTGTGAATATTGGAgcacttttctctttcaattctACAATTGGCAAAGTTGCAAAAGTAGCAATAGCAGCAGCAGTTGATGATGTAAATTCTAGTCCAAAGGTCCTTAATAGAACAAAGCTGAAAATTTCAATGCAGGATACTAGTCATAATGGCTTTCTAGGAATAATCAAGGCTCTAAGGTTAATGGAGAATGATACAATGGCCATAATTGGTCCCCAGTCTTCTGTCTTAGCTCACACAATTTCACAGGCTGCAAATGAGTTCCAAGTCCCTCTTTTATCATTTGCAGCCACTGATCCCACCCTTTCTTCCCTAGAGTTCCCATATTTTGTTAGAACAACACAGAGTGATCTCTTTCAGATGTCAGCAATAGCAAATATTGTAGATTACTATGAGTGGAGAGATGTCATAGCAATTTATGTTGAAGATGATTATGGAAGGAATGGGGTTGCTGTATTAGGAGATAAGCTAGCTgagaaaagattgaaaatattatacaaagCACCTCTTAGTCCTAACATGAGCCGGTTTGACATAATTGATGTTCTAAGTAAGCTAGCATCAATGGAGTCTAGGGTTTTGATGGTTCATACATATGCAGATTTGGGTCTAGAGGTTTTTGATGTTGCAAAAGACTTGGGGATGATGAGTGCTGGTTATGTTTGGGTCACCACTGACTGGCTTTCCACCGCGTTGGATGCTAATTATGATCTTGCTACAAAGGTCGTTGATGGCATCCAAGGTGTTCTTACACTTCGTATGTACTCCCCAGACTCtgaaattaaaaggaatctTATTTCCAGGTTGGAAAAATCACCTAGTGGTTCAGTAGGATTGAATACATATGGTTTATATGCCTATGACACTGTATGGCTTCTTGCTCAAGCAATTGATGAGCTTCTAACTCAGGGAactcatatttcattttcaattgattCAAAGTTAACCCAACTAAATGGAAAGAGTGTGAGTTTTGATTCTGTGAGAATTTTTAATGAGGGAAACTTGTTGCTTAAGAGCATTTTTAAGGTCAATTTGACAGGTGTAACAGGCAAGATGAAGTGTAATTCAGATGGTTGTGTGGTCAATCCTGCTTATGAGGTTATCAATATCATTGGCACTGGCCTTAGGAAAATTGGTTATTGGTCCAATTATTCAGGATTGTCAGTAGTGCCTCCAGAAAATCAGCACTCGAAGCCTAATGATACTTCCAGCTCAAAGCAACAACTCCATGGAGTTGTCTGGCCTGGACAAACAACAGTGAAGCCTCGCGGGTGGGTCTATCCAAATGATGGAAAGCCATTGAGAATAGGTACCACAAAGCCTCTTTTCAAAGAAATTCTTTATCAGGTGGAAGGCACCGATAGATATTCTGGCTTCTGCATTGATGTGTTTACTGCTGCACTGGAATTGTTGCCATATAGCTTCTCATATCAGTTTATTCCATCGAATCAACAGCAGCCAAATAACACCGAGCTCGTGCATATGGTCCAAATGGGGGTCTATGATGCTTTGGTGGGTGACATTTCAGTCACCACTGACCGCATGCGAATGGTAGATTTTACTCAGCCATATGTTGAGTCTGGTCTGGTTGTTGTGGCTCCCATCAAGAAGTTAAACTCAAGTACCTGGGCCTTTTTGAGACCCTTTACTCCAATGATGTGGTGTGTCACAGGTTTCTCTTTCATCGTTGTGGGAGTACTTATCTGGTTCTTGGAgcataagaaaaatgatgattttagGGGACCTCCCAGAAAACAAGTTATCAATATACTATTGTTCGGCTTTTCAACCTTGTCCTCTTCTCATAGAGAAAAAACAACGAGCGATCTTAGTCGGTTTCTGCTTATAGTTTGGCTATCTGTGGTGCTAATACTGAACTCAACCTACACAGCAAGTTTGTCATCAATCCTTACAGTGGAGCAGCTATCTTCTACAATCAAAGGAATTGAGAGTTTACTCTCAAGCCGCGACCCTATTGGTTACCAAAGAGGTTCATTTGCTGGGAATTACTTAACCAATGAACTAAGCGTACAACGTTCGAGGGTTGTTCCTCTGAACACGCCAGAAGAGTATGAAAGAGCTTTAATCAATGGTCCTCATAAAGGTGGTGTTGCTGCATTGGTCGATGAACGTGTAAGAATGGAAATTTTCCTCTCCAACAGATGTGAATTCAGCATGGTTGGCCAAGATTTCATGAGAATGGGCTGGGCATTCGCCTTCCAACGGGATTCACCACTTGCAGTGGACATGTCAACTGCCATATTAAAGCTCTCAGAGAGTGGAGAACTTCAAAGGATTCGCGACAAATGGCTGACACAAAGTCCTTGTGTCAAGCAAGGTGGGAAGCAAGAAATAGATCGTCTTCCGCTTGAAAGCTTTCTTGGTCTATTTTTCATATGCGGATCAGCTGGCCTTCTTGCCCTCCTTGTGTACTTTGTTCAAATGGTGCATAAGTTTATCAAACGCAACTCATATGAGTATCAATCTTCTAGTTTGAGATCAGGGTCTACAGCCCTTCGTTCATTCGCTTCATTTcttgatgaaaaagaagaaatcaatgAAAGCAAATCATG 2672 0.3937 MTKQVAILLVLIVFLKFSDTEMSKEMPTRSNVVNIGALFSFNSTIGKVAKVAIAAAVDDVNSSPKVLNRTKLKISMQDTSHNGFLGIIKALRLMENDTMAIIGPQSSVLAHTISQAANEFQVPLLSFAATDPTLSSLEFPYFVRTTQSDLFQMSAIANIVDYYEWRDVIAIYVEDDYGRNGVAVLGDKLAEKRLKILYKAPLSPNMSRFDIIDVLSKLASMESRVLMVHTYADLGLEVFDVAKDLGMMSAGYVWVTTDWLSTALDANYDLATKVVDGIQGVLTLRMYSPDSEIKRNLISRLEKSPSGSVGLNTYGLYAYDTVWLLAQAIDELLTQGTHISFSIDSKLTQLNGKSVSFDSVRIFNEGNLLLKSIFKVNLTGVTGKMKCNSDGCVVNPAYEVINIIGTGLRKIGYWSNYSGLSVVPPENQHSKPNDTSSSKQQLHGVVWPGQTTVKPRGWVYPNDGKPLRIGTTKPLFKEILYQVEGTDRYSGFCIDVFTAALELLPYSFSYQFIPSNQQQPNNTELVHMVQMGVYDALVGDISVTTDRMRMVDFTQPYVESGLVVVAPIKKLNSSTWAFLRPFTPMMWCVTGFSFIVVGVLIWFLEHKKNDDFRGPPRKQVINILLFGFSTLSSSHREKTTSDLSRFLLIVWLSVVLILNSTYTASLSSILTVEQLSSTIKGIESLLSSRDPIGYQRGSFAGNYLTNELSVQRSRVVPLNTPEEYERALINGPHKGGVAALVDERVRMEIFLSNRCEFSMVGQDFMRMGWAFAFQRDSPLAVDMSTAILKLSESGELQRIRDKWLTQSPCVKQGGKQEIDRLPLESFLGLFFICGSAGLLALLVYFVQMVHKFIKRNSYEYQSSSLRSGSTALRSFASFLDEKEEINESKS 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01082 890 CDD GluR_Plant 465 804 - -
Bva02g01082 890 Gene3D - 774 804 - -
Bva02g01082 890 Gene3D - 452 574 - -
Bva02g01082 890 PIRSF IGluLR_plant 1 890 IPR017103 -
Bva02g01082 890 Pfam Bacterial extracellular solute-binding proteins, family 3 486 805 IPR001638 -
Bva02g01082 890 PANTHER GLUTAMATE RECEPTOR 22 886 - -
Bva02g01082 890 SUPERFAMILY Periplasmic binding protein-like II 444 807 - -
Bva02g01082 890 SUPERFAMILY Periplasmic binding protein-like I 29 458 IPR028082 -
Bva02g01082 890 Gene3D - 734 773 - -
Bva02g01082 890 Gene3D - 51 395 - -
Bva02g01082 890 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 318 330 - -
Bva02g01082 890 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Bva02g01082 890 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Bva02g01082 890 Gene3D - 575 696 - -
Bva02g01082 890 SMART GluR_14 468 806 IPR001320 GO:0015276|GO:0016020
Bva02g01082 890 CDD PBP1_GABAb_receptor_plant 34 424 IPR044440 -
Bva02g01082 890 Pfam Ligand-gated ion channel 806 834 IPR001320 GO:0015276|GO:0016020
Bva02g01082 890 Pfam Receptor family ligand binding region 51 404 IPR001828 -
Bva02g01082 890 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 886 - -
Bva02g01082 890 Gene3D - 148 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01082 Bva-Chr2 15063653 15070695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01082 8 890 Ion Channels AT3G51480 54.115 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01082 K05387 - tcc:18610633 1071.61