Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00996 ATGGAGAGAAAAGTGGAGGCAATCCAAAAACCTAAACGCCCTTCTTTCTTCAAGTTGATCCCTAGGCTGTTTGTAAAGAAATATCGTAGTATTTTCTCAGACAAAGCAGTTCTTGAGGTTTTTCCACGTAAAACATGGACTGTTGACATTGTGGAAGAAGATGTGAACAAATTGTATTTCAAAAATGGCTGGAGGACTTTTGTGAAAGAAAACAGTCTACAGTATGGtgaatttgtaattttcaaatatgaaGGGAACTCAACTTTCAAGGTTAAGATGTATGGATTTTCTTGCTGTGACAAGGCAATTGAGATGGGCACTCACCAGTATCAAAATGTTAATGCTGACAAAGAAAATCACTCAGAAAGAAAGTCCAATGCAGAAAATGGGCACAAGCAAAAGCAAGAAGAGAATTCAGATTCTAATTGCGATAGGAACCAAAGTGAAGCATTGAAGGGTGAAAATGTTAGCAAGAGACATGAAAAGGAAGCcgaagaacaaagaaaagaggatAGCAAGAGAGGTCAAGAAGCCGAAGAAAAGGCTAAAGGGGTAAGCAATGAAGCTGAACCATTGAAGGGCTCAGGAGATAAAAGGAGAATTGATCAAGAAGCTGAAGAAGATGTAAAAGACATTATTGAAATTGTATCTGACTCTGATGGGGAAATTGGTGATGTTGGGAATAGAAGGCgaacaaagaagaagagaagaactATTCCCAGTGTTATCAAAGAAGGCAGTAAACAATTCAAGCTAAAGAGTCCTGCATTTCAAGTTGTTCTTCCACCTGCCTatataaaaaggaattttCTGAACGTTCCTATAGACTTTTTCAAAGAACATCTGCAACAAAAGGAACAGAATGTGGAACTTCATAGTTCAAAAGGCAAGTGGATTGTGAAATTGGCTCCCTACTCCGTACGGAGAAGCAAATACGCCAGGCTAAGCAAAGGTTGGCTGAATTTCGTTAGAGATAACAAATTGAAGGTTGGACAAACTTGTGTCTTTGAACTCATTCGGAGCAATAGACCTTTGTTTCAAGTTCATGTGCTTGAAAACCAATG 1064 0.3628 MERKVEAIQKPKRPSFFKLIPRLFVKKYRSIFSDKAVLEVFPRKTWTVDIVEEDVNKLYFKNGWRTFVKENSLQYGEFVIFKYEGNSTFKVKMYGFSCCDKAIEMGTHQYQNVNADKENHSERKSNAENGHKQKQEENSDSNCDRNQSEALKGENVSKRHEKEAEEQRKEDSKRGQEAEEKAKGVSNEAEPLKGSGDKRRIDQEAEEDVKDIIEIVSDSDGEIGDVGNRRRTKKKRRTIPSVIKEGSKQFKLKSPAFQVVLPPAYIKRNFLNVPIDFFKEHLQQKEQNVELHSSKGKWIVKLAPYSVRRSKYARLSKGWLNFVRDNKLKVGQTCVFELIRSNRPLFQVHVLENQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00996 354 CDD B3_DNA 14 94 IPR003340 GO:0003677
Bva02g00996 354 SMART B3_2 257 352 IPR003340 GO:0003677
Bva02g00996 354 SMART B3_2 8 97 IPR003340 GO:0003677
Bva02g00996 354 SUPERFAMILY DNA-binding pseudobarrel domain 251 352 IPR015300 -
Bva02g00996 354 CDD B3_DNA 257 351 IPR003340 GO:0003677
Bva02g00996 354 PANTHER B3 DOMAIN-CONTAINING 11 351 - -
Bva02g00996 354 Coils Coil 110 137 - -
Bva02g00996 354 Gene3D - 240 354 IPR015300 -
Bva02g00996 354 Gene3D - 7 99 IPR015300 -
Bva02g00996 354 MobiDBLite consensus disorder prediction 116 143 - -
Bva02g00996 354 ProSiteProfiles B3 DNA-binding domain profile. 20 97 IPR003340 GO:0003677
Bva02g00996 354 ProSiteProfiles B3 DNA-binding domain profile. 256 354 IPR003340 GO:0003677
Bva02g00996 354 Pfam B3 DNA binding domain 258 349 IPR003340 GO:0003677
Bva02g00996 354 Pfam B3 DNA binding domain 18 93 IPR003340 GO:0003677
Bva02g00996 354 SUPERFAMILY DNA-binding pseudobarrel domain 12 99 IPR015300 -
Bva02g00996 354 MobiDBLite consensus disorder prediction 151 205 - -
Bva02g00996 354 MobiDBLite consensus disorder prediction 116 205 - -
Bva02g00996 354 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00996 Bva-Chr2 14335866 14338213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00996 13 341 B3 DNA Binding Superfamily AT3G18990 25.069 5.83e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva02g00996 B3 3.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00996 - - qlo:115964725 162.54