Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00949 ATGTTAATCCAGAGTTCTTTTCCTTGTTCTATTGAGGCTGCTCCATTTTATATATCTGATCATGGGAAGGAAGATGTTCTATGTGACCGGATGCCTAGTGCTGAAACTTGGCAGGTGTATCTGAAATGCAAAGATCACCCTTTTGACCGGTGCAGAAAAGCTGAACCCATGCAAGATGATAGTAGGAATGCTGATGATCCTTGTAGCTCAAACTTTCCGAGCAGCTTAGGTTGGCCATCAACTGTCAGTACAATGACCGAAAATACCATTCCTAATAAAGTCTACAGGAGAAAGAAGCTACGAAAGGATTCAACAGCCCCTCTTTTGAAGCTGGAACCTGTGAATGTGCAGAGATGTATCAATTTCACTTCAATCATAGGCTCCTGTGCTCATTTATCATCAGCTGAGGATCAGCCAGCAGGTTCTGAAATTAAGCATGAAATTGGAACAGTTAAAGATCCTGTTGCACCTGCTGCCTTGTATGATAGAGCGCCCTATTTTTCAAACCAAGATTCAAAAAATCAGTGTTTACTTGGGGAAGATGGTGATGGAGCAACTAAAAATagcttgaagaaaaatttaggtATCGACAGTGTGAATGATAGTTGCTCCACATCAAAGTCGAATGTGGATCTTGCTTCAGATTCCATAGAAACTGAAAGGAATGAAACTGGTGAATGCTCCTCCTCTAGTGTAATAGCTATGGATGTCATGAGGGAAGATCAATCAGAAAAGGATTTCTGcatcaatattttaagaagTTATGGTCTTCTTGGAGGAGCCTTTCCTACTGACAATGGGGCTTCTGAGGGAGATGCTGTTACTGCTGGTAAAAGCTGCTGTCGCCGATCATGCAAAATATGCAGTCAGTTTGCTGGTTCACTAAAAATGCTTATATGTGATCATTGTGAAGAAGCATATCATCCAGCTTGCTGGAATCCACGTTGGAAGAAGAAACTACCCCTTGATGAGTGGTTTTGCAATTCGTGTCTAATAAAGAAGCGAAAAATCCTCTCAGAAACAATCACCAGAAGTTCGCCCGGTATCAACAGTGAATTGGGTGGAACTATACTATCAACGTTGAAAGACACTGAGCCATATACTACTAAAGTGCGGATTGGTAAAGGTTTTCAAGCAGAAGTTCCGGAGTGGTTAGGCCCAATAAGTAGTGATTATGATGTTGCTGAACCATCAGAGATTGATTGTTCagaaatttcctttttgaagGATGAAAATTTCACAAAGCCAGCTAGCCACAGCGCTATTGGTAATTGGCTTCAGTGTCGAGAGGTTATGGATAGATCAAATGGAACTATTTGTGGAAAATGGCGCAGGGCTCCAATTTTTGAAGTCCAAGCTGATGATTGGGAGTGCTTCTGTGCCATCCACTGGGATCCAGCTCATGCTGACTGTGCTGCACCTCAGGAGATGGAAACAGACCAAGTTCTAAAGCAACTAAAGTATATAGAAATGTTGAGACCCCGGCTTACAAAGCGAAAATCTGAATGCTCAAAGCGAAGTGAATA 1526 0.4076 MLIQSSFPCSIEAAPFYISDHGKEDVLCDRMPSAETWQVYLKCKDHPFDRCRKAEPMQDDSRNADDPCSSNFPSSLGWPSTVSTMTENTIPNKVYRRKKLRKDSTAPLLKLEPVNVQRCINFTSIIGSCAHLSSAEDQPAGSEIKHEIGTVKDPVAPAALYDRAPYFSNQDSKNQCLLGEDGDGATKNSLKKNLGIDSVNDSCSTSKSNVDLASDSIETERNETGECSSSSVIAMDVMREDQSEKDFCINILRSYGLLGGAFPTDNGASEGDAVTAGKSCCRRSCKICSQFAGSLKMLICDHCEEAYHPACWNPRWKKKLPLDEWFCNSCLIKKRKILSETITRSSPGINSELGGTILSTLKDTEPYTTKVRIGKGFQAEVPEWLGPISSDYDVAEPSEIDCSEISFLKDENFTKPASHSAIGNWLQCREVMDRSNGTICGKWRRAPIFEVQADDWECFCAIHWDPAHADCAAPQEMETDQVLKQLKYIEMLRPRLTKRKSECSKRSE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00949 508 Pfam PHD-finger 285 331 IPR019787 -
Bva02g00949 508 Gene3D - 423 488 - -
Bva02g00949 508 ProSiteProfiles Zinc finger CW-type profile. 419 479 IPR011124 GO:0008270
Bva02g00949 508 SMART PHD_3 284 331 IPR001965 -
Bva02g00949 508 ProSiteProfiles Zinc finger PHD-type profile. 282 333 IPR019787 -
Bva02g00949 508 PANTHER REMODELING AND SPACING FACTOR 1 23 497 - -
Bva02g00949 508 SUPERFAMILY FYVE/PHD zinc finger 282 336 IPR011011 -
Bva02g00949 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 348 IPR013083 -
Bva02g00949 508 PANTHER HISTONE ACETYLTRANSFERASE 23 497 - -
Bva02g00949 508 Pfam ELM2 domain 371 479 IPR000949 -
Bva02g00949 508 ProSitePatterns Zinc finger PHD-type signature. 285 330 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00949 Bva-Chr2 13467990 13480577 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva02g00949 ELM2 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00949 - - aprc:113864532 599.742