Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00896 ATGCTGCTTGGGCAATCTCCTCCTGTAACCTTCATCCCCAAACCCAGTCGCTTGGAGTCGCAATCTCAAAGGCATGgccctctcttcttcttccctcaCACTTGCTTCCGCGACAAAGCATGTACGAAAAAATTGCCCAGAAGTGTTGGAAACTCAGTGCTGGTTAGAGCTGGGTATTCTCCTACACCCAAAGATGTTCTCTCTTGGAGCCCTTCCACCTCCAACAATGTGCTAAACCAGAATTTGGAGAAATCTTCACTCCAAGCAAGTAAAACTGACATCGAAGGTATTGAATATGTGCCAGTTATTTCTGATAATGATTCGTTAGTAAACTCTAGGAGGGTAATATCAGGGAGTTTCAAAAGGTTGAATGCACAAAAAGTGAAGAATCTCATCCACAGAACTTCTCGATCGAAGCAGGAAAGAAGTGGAGATGATGATAAACGAGCTGTAGGGGCTTCTGTAGATAGGGAATGCGTTGAAGATAATTCTAAGCTTGAAACATTTGTGAAAGAGATAAAAGAGGATGCACCCAACCATCGAGGTAGAGTTTCTAAAGCTCACCTATCACATGAAAGCAGACACAGGAAGCAATTAATCGGaatggaagaagatgaaaatgtGAGTCTTGGTTCCACTTCAAACTCTAATAAGTTTCAAAACTCTAATAATAAGATAGCCAGTTCCAGAGTGTCAGATACAAGGCATTCTGACTCTCAGTTAAGAGGATGGGGTAGTGGAGGATCTTCACGTACTTTTAAGTCTGAATCACAAAAGCCTCCAAAGGAACAGATTGACAATGACTTTTTCAGTCGAAAGTCCTTTAAAGATCTAGGATACACAGATTATATGATTGAATCTCTGAAGAAGCAACATTACATGCGGCCTTCAAATATACAGGCCATGGCATTTACACCCATTATTGGTGGAAAGACTTGTGTGATTGCTGATCAGAGTGGTTCAGGAAAGACATTAGCATATCTTGCTCCAATAATACAGCGTCTTAGACAAGAAGAACTAGATGGACAAGGAAAATACTCTTCACAAGCTCCTAGAGTGGTTATATTGGCACCGACAGCTGAGTTAGCTTCTCAGGTTTTAGATAACTGCCGATCGATGTCAAAATCCGGGGTACCATTCAAATCTATGGTGGTAACAGGTGGCTTTCGACAGAGAACTCAACTGGAAAATTTGGAGCAGGGTGTTGACGTTTTAATAGCAACACCTGGTCGTTTTATGTTGCTGATTAAGGAAGGCTTCCTCCAGTTGACAAATCTAAGATGCGTTGTATTAGATGAGGTAGATATACTTTTTGGTGATGAGGACTTCGAAGCAGTACTCGAGTGCCTGATAAATACTTCACCTGTTACCACACAATATTTGTTTGTGACTGCAACTTTGCCAAGAGAAATTTACAATAAACTAGTTGAAGTTTTTCCTGACAGTGAAGTTATCATGGGACCTAGTATGCACCGGATAAGTTCCCGGCTTGAGGagGTTCTGGTAGATTGCAGTGGCGAAGatggacaagaaaaaaatcccGATACAGCATTTTTGAACAAGAAAACTGCCCTTTTGCAGATTGTGGAGGGAAGTCCTGTTCCAAAAACCATTGTTTTCTGTAACAAAATCGAAACATGCAGAAAAGTTGAGAATGCATTGAAGCGTGCAGATAGAAAAGGAACTCGAATGCAAGTCCTACCTTTCCATGCTGCCATGACTCAAGATTCAAGACTTGCTAACATGGAAGGGTTTATGCGTTCTCAGTCAAAAGAAGTCTCTCAGTTTCTTATATGCACTGACAGGGCGTCGCGGGGAATTGATTTTACCAAAGTGGCTCATGTCATACTGTTCGATTTCCCACGCGATCCAAGCGAATATGTGCGTCGTGTTGGAAGAACTGCCAGAGGTGCTGGGGGAAAGGGCAAGGCATTTATCTTTGTGGTTGGGAAGCAAGTTTCCCTTGCAAGCAGATTAATGGAGAGGAATAGGAAAGGCCATCCACTGCATGATGTACCATTTGCCTATTA 2030 0.4094 MLLGQSPPVTFIPKPSRLESQSQRHGPLFFFPHTCFRDKACTKKLPRSVGNSVLVRAGYSPTPKDVLSWSPSTSNNVLNQNLEKSSLQASKTDIEGIEYVPVISDNDSLVNSRRVISGSFKRLNAQKVKNLIHRTSRSKQERSGDDDKRAVGASVDRECVEDNSKLETFVKEIKEDAPNHRGRVSKAHLSHESRHRKQLIGMEEDENVSLGSTSNSNKFQNSNNKIASSRVSDTRHSDSQLRGWGSGGSSRTFKSESQKPPKEQIDNDFFSRKSFKDLGYTDYMIESLKKQHYMRPSNIQAMAFTPIIGGKTCVIADQSGSGKTLAYLAPIIQRLRQEELDGQGKYSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMLLIKEGFLQLTNLRCVVLDEVDILFGDEDFEAVLECLINTSPVTTQYLFVTATLPREIYNKLVEVFPDSEVIMGPSMHRISSRLEEVLVDCSGEDGQEKNPDTAFLNKKTALLQIVEGSPVPKTIVFCNKIETCRKVENALKRADRKGTRMQVLPFHAAMTQDSRLANMEGFMRSQSKEVSQFLICTDRASRGIDFTKVAHVILFDFPRDPSEYVRRVGRTARGAGGKGKAFIFVVGKQVSLASRLMERNRKGHPLHDVPFAY 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00896 676 MobiDBLite consensus disorder prediction 134 156 - -
Bva02g00896 676 MobiDBLite consensus disorder prediction 1 20 - -
Bva02g00896 676 MobiDBLite consensus disorder prediction 172 186 - -
Bva02g00896 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 649 IPR027417 -
Bva02g00896 676 MobiDBLite consensus disorder prediction 132 156 - -
Bva02g00896 676 SMART ultradead3 292 500 IPR014001 -
Bva02g00896 676 CDD DEADc 284 473 - -
Bva02g00896 676 Pfam DEAD/DEAH box helicase 298 471 IPR011545 GO:0003676|GO:0005524
Bva02g00896 676 Gene3D - 494 669 IPR027417 -
Bva02g00896 676 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 105 674 - -
Bva02g00896 676 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 304 485 IPR014001 -
Bva02g00896 676 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 105 674 - -
Bva02g00896 676 MobiDBLite consensus disorder prediction 172 268 - -
Bva02g00896 676 SMART helicmild6 548 638 IPR001650 -
Bva02g00896 676 MobiDBLite consensus disorder prediction 207 230 - -
Bva02g00896 676 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 273 301 IPR014014 GO:0003724
Bva02g00896 676 Gene3D - 231 485 IPR027417 -
Bva02g00896 676 Pfam Helicase conserved C-terminal domain 522 637 IPR001650 -
Bva02g00896 676 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 676 IPR001650 -
Bva02g00896 676 MobiDBLite consensus disorder prediction 238 255 - -
Bva02g00896 676 CDD SF2_C_DEAD 497 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00896 Bva-Chr2 12940755 12946717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00896 274 648 Eukaryotic Initiation Factors Gene Family AT3G19760 28.000 6.77e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00896 K13179 - qsu:111998557 707.597