Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00846 ATGATGGCCACTTCTATTTTGATAGTATTCGTGGTTCTCCTGGGTACCATAAATACTATAACCACGAATActattgaagaagaaagggcTTTGACCCAAAGCAATTGGTGGAGTGGCAAAAACATCTCAAGCCGTTGCTACTGGCACGGTATTGTGTGCAACAAAGCTGGAAGCATCAtaaaattttcccttttaactTCCGATTACCTGCCTTTTTCTCCACCGCAGCTTCGCTCAGTCAACTGGACAGCATTCCCTAATTTAGTTAGTCTAGATCTGAGTGGAATCAGTCTATGGGGAACCATCCCTGAGAATATTGGTGCACTTCTAAAGCTTACCTATCTCAACATTTCCCATAATAATCTTGAAGGTAAGCTCCCTCCTACAATTGCAAACCTCACTCACCTTGTGATGTTTGATGtttcattcaataatatcAATGGTCAGATTCCCGAAGAAATAGGAAGTTTGACCAACCTTGTGAAACTAGACTTGAGCTCAAACAAGTTCAGTGGATCCATCCCTTCTAGTTTGGGTTTCTTGTCCAGTCTCATCCATATGCAGATGtcccaaaatttcttatttggtAAGATACCTCGAGAAAtaggaaaattaaagaatttgacTGTGTTAGACCTTTCAACCAACCAACTCACGGGTCCAATTCCACTTGCTTTAGgaaaattatttagtttaaaagttTTGTCCCTTAGTCTCAACAAAATTACAGGTTTCATTCCAGTAGAAATAGGGAATTTAACCCATTTGGAGATTCTAGACATTTCTGATAACCAACTCACTGGACCAATTCCTTCTAACGTTGTACTGCATGGCACGGGTGCTTATGGTAGTGTCTACAGGGCTCAACTTCCTAGTGGCAAAATTGTTGCACTGAAGAAACTTCACCGATTAGAATCTGAAGAGCCATCTTTTGACAGCAGTTTCCGCAATGAGGTCAAATTCTTGACTGATATTCGTCATAGAAACATTGTCAAGCTTTATGGTTATATTTTGCACAACAGGTGCATGTTTCTGGTCTATGAGTATATGGACAGAAGAAGCTTACTTTGGGTTTTGAGCAATGATGACGAAGTTCAGGAGTTGAATTGGAGAAAGAGGAATGTCTCGGACTTTGGCACAGCTAGAATACTTGATCCCGATTCCTCAAATCAAACTCTACTTATTGGTACGGTTGGATATATTGCACCAGAGCTTGCATACACACTGAGTGTGACTGAAAAAtgtgatgtttatagtttagGAGTGGTGGCTTTGGAAACAATGACGGGAAAGCATCCAGGAGACTTTATTTCCTCTTTGAGAAGTTCTGGTGCTCCTAATATGCTGTTGAAAGATGCCAAAGATGTGGTTTGGTGGTG 1379 0.3778 MMATSILIVFVVLLGTINTITTNTIEEERALTQSNWWSGKNISSRCYWHGIVCNKAGSIIKFSLLTSDYLPFSPPQLRSVNWTAFPNLVSLDLSGISLWGTIPENIGALLKLTYLNISHNNLEGKLPPTIANLTHLVMFDVSFNNINGQIPEEIGSLTNLVKLDLSSNKFSGSIPSSLGFLSSLIHMQMSQNFLFGKIPREIGKLKNLTVLDLSTNQLTGPIPLALGKLFSLKVLSLSLNKITGFIPVEIGNLTHLEILDISDNQLTGPIPSNVVLHGTGAYGSVYRAQLPSGKIVALKKLHRLESEEPSFDSSFRNEVKFLTDIRHRNIVKLYGYILHNRCMFLVYEYMDRRSLLWVLSNDDEVQELNWRKRNVSDFGTARILDPDSSNQTLLIGTVGYIAPELAYTLSVTEKCDVYSLGVVALETMTGKHPGDFISSLRSSGAPNMLLKDAKDVVWW 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00846 459 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 24 274 - -
Bva02g00846 459 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 278 373 - -
Bva02g00846 459 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 375 453 - -
Bva02g00846 459 Gene3D Ribonuclease Inhibitor 18 174 IPR032675 -
Bva02g00846 459 PRINTS Leucine-rich repeat signature 253 266 - -
Bva02g00846 459 PRINTS Leucine-rich repeat signature 208 221 - -
Bva02g00846 459 SUPERFAMILY Protein kinase-like (PK-like) 278 438 IPR011009 -
Bva02g00846 459 Pfam Protein kinase domain 278 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g00846 459 Pfam Protein kinase domain 375 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g00846 459 SUPERFAMILY L domain-like 44 272 - -
Bva02g00846 459 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 24 274 - -
Bva02g00846 459 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 278 373 - -
Bva02g00846 459 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 375 453 - -
Bva02g00846 459 Gene3D Phosphorylase Kinase; domain 1 281 346 - -
Bva02g00846 459 SMART LRR_sd22_2 109 135 - -
Bva02g00846 459 SMART LRR_sd22_2 229 250 - -
Bva02g00846 459 SMART LRR_sd22_2 205 226 - -
Bva02g00846 459 SMART LRR_sd22_2 253 276 - -
Bva02g00846 459 SMART LRR_sd22_2 157 172 - -
Bva02g00846 459 Pfam Leucine Rich repeat 253 268 IPR001611 GO:0005515
Bva02g00846 459 ProSiteProfiles Protein kinase domain profile. 271 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g00846 459 Gene3D Ribonuclease Inhibitor 175 280 IPR032675 -
Bva02g00846 459 Pfam Leucine rich repeat 86 146 IPR001611 GO:0005515
Bva02g00846 459 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515
Bva02g00846 459 SMART LRR_typ_2 205 229 IPR003591 -
Bva02g00846 459 SMART LRR_typ_2 157 181 IPR003591 -
Bva02g00846 459 SMART LRR_typ_2 109 133 IPR003591 -
Bva02g00846 459 SMART LRR_typ_2 253 277 IPR003591 -
Bva02g00846 459 Gene3D Transferase(Phosphotransferase) domain 1 347 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00846 Bva-Chr2 12322395 12324938 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00846 88 282 Receptor kinase-like Gene Family AT2G15080 31.111 2.82e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva02g00846 Pkinase 1.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00846 - - vri:117923909 348.977