Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00700 ATGACAAAGTCATACTCTTGCGttttcctcttcctttttccttccttcttaGCTGCCCATTTTGGGGTTGGGGCTACTCCTCTCTTAGGAGGAAAGACGTTGAAAATTGGGATACCCTTTAAAACTGATTTTAAGGAGTTTGTGGATGTTAAACTGAATAGTACAAACCAGGCAATACAGAAGCAGGTTAAAGGGTACTCAATTGACGTTTTCTTTGCTGCAGTATCTTATCTGGAAGGGCAGTACTCAGGCGTAAAGATTTCTTATGAGTTTGAAGCTTTTGTAAACAAAGAGAGGAAGTTTAATGGCACTTACGAAGAACTTCTGCAACGAATCCCATCTGGAAAGtATGATGCTGTGGTGGGTGATGTAACTATTGTGGCGAACCGGTCAACCTATGTAGATTTTACGTTGCCATATGCAGAATCAAGCGTGAGGATGCTTATACAAGTTAGACATAATCGCCACTTAGATATGTGGATCTTTCTAAGGCCATTTAGTTGGGATCTTTGGCTCTCCATCATCTTATTTTGTGTCTTTATAGGATTTGCACTATTGTTCATGGAACGTAATGCAAACAAAGATACAGGAACTGAAGAAACACcaggtgaaaaaaaatttactggACCATCAATTTTATGGCTTCCTATTGCTCAAGCAGTGCTGCCTGAAAGTGAATCTGTTGCCAAGAAATGCTCTAGGTTTGTACTTCTAGTGTGGCTAGCATTAGCATTCATTCTCGTGCAAAGCTACACAGCGAATTTATCCTCAATCTTGACATTAGATCAAATAAAGCCAAGTTATCCTACCATCGATAGTCTAATAAGAGATCAAGAAAATGTTGGATACCGGCACGGTTCTTTCATAAACAATTTGTTAATAGATCGCTTACACTTTGATGAATCGAGACTTAGAAATTTCTCCAAGATGGAAGATTATCGTGAGGCCTTAAGAAAAGGAACTCGAAATGGAGGCATCGGTGCTATGTTTGATGAATTGCCCTACATTAAAGTCTTCCTCAAAAGGTATGGTTCCAAGTACATGATGGCTGGACGTACCTATCCCAACagtggttttggttttGCATTCCCACTAGGTTCCCATCTTACGTCTTACTTCTCAAGCGCCATATTGCATGTCATTGAAAGTTCAACGATGGAtatgattgaagaaaaatactttgGGGTCAATTATGATGATCTTCAAGATCAGTACGACCAAATATCATCAGAAACTTCCAGCCTCACCACACAAAGCTTTGCAGGCCTGTTCATAATCACAGGATCCCTTATCATATTAGCTTTGCTAGTCTCTGAAAGCTATATTTGGAAAAGGCTAGTTATGGTGGCCAAAACTTTCagcaaaaaatatctattcttAAGTTCTAGAAAAGTGAATCCATCAATGGATGGTTCTACAAATGAAAGGGACGCTGGTTCAaccaatgaagaaaataaccaTCAAGAAAGTCTTCCAAGATCTCCTTCATTATCTGTGGCTGTGTA 1505 0.3674 MTKSYSCVFLFLFPSFLAAHFGVGATPLLGGKTLKIGIPFKTDFKEFVDVKLNSTNQAIQKQVKGYSIDVFFAAVSYLEGQYSGVKISYEFEAFVNKERKFNGTYEELLQRIPSGKYDAVVGDVTIVANRSTYVDFTLPYAESSVRMLIQVRHNRHLDMWIFLRPFSWDLWLSIILFCVFIGFALLFMERNANKDTGTEETPGEKKFTGPSILWLPIAQAVLPESESVAKKCSRFVLLVWLALAFILVQSYTANLSSILTLDQIKPSYPTIDSLIRDQENVGYRHGSFINNLLIDRLHFDESRLRNFSKMEDYREALRKGTRNGGIGAMFDELPYIKVFLKRYGSKYMMAGRTYPNSGFGFAFPLGSHLTSYFSSAILHVIESSTMDMIEEKYFGVNYDDLQDQYDQISSETSSLTTQSFAGLFIITGSLIILALLVSESYIWKRLVMVAKTFSKKYLFLSSRKVNPSMDGSTNERDAGSTNEENNHQESLPRSPSLSVAV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00700 501 CDD GluR_Plant 32 394 - -
Bva02g00700 501 Gene3D - 360 394 - -
Bva02g00700 501 MobiDBLite consensus disorder prediction 467 501 - -
Bva02g00700 501 SMART GluR_14 35 396 IPR001320 GO:0015276|GO:0016020
Bva02g00700 501 Pfam Ligand-gated ion channel 396 428 IPR001320 GO:0015276|GO:0016020
Bva02g00700 501 Gene3D - 310 359 - -
Bva02g00700 501 Gene3D - 28 159 - -
Bva02g00700 501 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 466 - -
Bva02g00700 501 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 4 466 - -
Bva02g00700 501 Gene3D - 160 295 - -
Bva02g00700 501 Pfam Bacterial extracellular solute-binding proteins, family 3 93 395 IPR001638 -
Bva02g00700 501 SUPERFAMILY Periplasmic binding protein-like II 1 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00700 Bva-Chr2 10273004 10275428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00700 31 495 Ion Channels AT2G29120 36.196 2.39e-78 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00700 K05387 - aip:107641909 479.174