Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00687 ATGGCAAAGTCATACtgttgtgttttctttttctcttctctttactTCTTAGTTGCCCAGTTTGGGGTTGGGGCTACTCCTCTTTTGGGAGGAAAGACGTTGAAAATTGGGATACCCATTAAAACTGATTTTAAGGAGTATGTGGATGTTAAACTGAATAGTACAAACCAGGCCATACAGAACCAGGTTTCTGGGTACTCAATTGACGTTTTCTTTGCTGCAGTATCTTATCTGGAAACGCAATTAGGCTTAAAGGTTTCATATGAGTTTGAAGCCTTTGTAAACAAAGAGGGGAAGTTTGCTGGCACTTATGAAGAACTTCTGCATCAAATTCCTAAAAAGGTTAGACAAAGAGAATCTGTTGCCAAGAAATGCTCCAGGTTTGTACTTCTGGTGTGGTTAGTGTTGGCATTCGTTCTCATGCAAAGCTACACAGCAAATTTGTCCTCAATCTTGACATTAGATCAACTAAAGCCAAGATACCCCACCATAGATCGTCTAATAAGAGACCGAGAAAATGTTGGATATCGGCACGGTTCTTTCATAAGAGATTTGTTAAGAGATCACTTGCACTTTGATGAATTGAGGCTTAAAAATTACTCCAAGATGGAAGATTATCGTAATGCTTTAAGTAAAGGAACCCAAAAGGGAGGTATTGCTGCTATGTTTGATGAATTGCCCTACATTAAAGTCTTCCTTAAAAAGCACGGTTCCAAGTACACGATGGCTGGACCTACCTATCCGAAccatggttttggttttGCATTCCCACTAGGTTCCAACCTCACTTCTCACTTCTCAAGAGCCGTATTGAATATCACTGAAAGTCCAACAATGGATaagattgaacaaaaatacTTCGGCATCAATCATGAAGATCACCAAGATCAGTACGACCAAATATCATCAGAAACTCCCAGCCTCACAACGCAGAGCTTTGGAGGCCTGTTCATAATCGCTGGATCCCTTATCTTATTGGCCTTGCTAGTCTCTGAAAGCCATATTTGGAAAAGGCCAGTCATGCTGGCCAAAAATTTCAGCGAAAAATATCTATGCCGATCAAGTTCAAAAAAGGTCAATCCATCTGAGGATGATTCTACAAATGGAAAGGATGCTGGTGCAACCAATGAAGGGAATAACCTTGAAGAAAGACTTCCCAGATCGCTTTCATCGCCTGTGTA 1181 0.3887 MAKSYCCVFFFSSLYFLVAQFGVGATPLLGGKTLKIGIPIKTDFKEYVDVKLNSTNQAIQNQVSGYSIDVFFAAVSYLETQLGLKVSYEFEAFVNKEGKFAGTYEELLHQIPKKVRQRESVAKKCSRFVLLVWLVLAFVLMQSYTANLSSILTLDQLKPRYPTIDRLIRDRENVGYRHGSFIRDLLRDHLHFDELRLKNYSKMEDYRNALSKGTQKGGIAAMFDELPYIKVFLKKHGSKYTMAGPTYPNHGFGFAFPLGSNLTSHFSRAVLNITESPTMDKIEQKYFGINHEDHQDQYDQISSETPSLTTQSFGGLFIIAGSLILLALLVSESHIWKRPVMLAKNFSEKYLCRSSSKKVNPSEDDSTNGKDAGATNEGNNLEERLPRSLSSPV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00687 393 MobiDBLite consensus disorder prediction 355 393 - -
Bva02g00687 393 MobiDBLite consensus disorder prediction 366 393 - -
Bva02g00687 393 SMART GluR_14 35 289 IPR001320 GO:0015276|GO:0016020
Bva02g00687 393 Gene3D - 6 175 - -
Bva02g00687 393 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 113 - -
Bva02g00687 393 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 119 369 - -
Bva02g00687 393 Pfam Ligand-gated ion channel 118 321 IPR001320 GO:0015276|GO:0016020
Bva02g00687 393 Gene3D - 176 294 - -
Bva02g00687 393 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 113 - -
Bva02g00687 393 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 119 369 - -
Bva02g00687 393 Pfam Bacterial extracellular solute-binding proteins, family 3 141 288 IPR001638 -
Bva02g00687 393 SUPERFAMILY Periplasmic binding protein-like II 9 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00687 Bva-Chr2 9947617 9951189 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00687 126 331 Ion Channels AT5G11210 42.381 3.77e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00687 K05387 - aip:107641909 262.307