Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00672 ATGGAACGTAATGCAAACAAAGATAAAGGAATTGAAGATTCATCAGATCGAAGACAACTTACTGGGCCATCAATTTTATGGCTTCCTCTAGCTCAAGCAGTGCTGCCTGAAAGAGAATCTGTTGCCAAGAAATGCTCTAGGTTTGTGCTTCTGGTGTGGTTAGGGTTGGCATTTGTTCTCATGCAAAGCTACACAGCAAATTTGTCCTCAATCTTGACATTAGATCAACTAAAGCCAAGTCACCCCACCATAGATAGTCTAATAAGAGACAAGGAAAATGTTGGATACCGCCATGGTTCTTTTATAAGAGATTTGTTAAGAGATCACTTACACTTTGATGAATCGAGGCTTAAAAATTACTCCAAGATGGAAGATTATCGTAATGCCTTAAGTAAAGGAACTCCAAAAGGAGGTATTGCTGCTATGTTTGATGAATTGCCCTACATTAAAGTCTTCCTCAAAAAGCACGGTTCCAAGTACATGATGACTGGACCTACCTATCGGAAccatggttttggttttGCATTTCCACTAGGTTCCAACCTTACTTCTCACTTCTCAAGAGCCATATTAAATGTTACTGAAAGTCCAACGATGAATATGATTGAAGAAAAGTATTTTGGCGTCAATTATGATGATCTCCAAGATCAGTATGACCAGTTATCATCAGAAACGGCCAGCCTCACAGCACAGAGCTTTGCAGGCCTGTTTATAATCGCTGGATCCCTTATCTTATTGGCTTTGCTGGTCTCTGAAAGCCATATTTGGAAAAGGCCAGTTATGCTTGTCAAAACTCTCAGCCAAAAATATCTATTCTCGGCAAGTTCTAGAAAGGTCAATCCATCTGATGATGGTTCTACAAATGAAAGGGATGCTGGTGCAACTACATA 890 0.3921 MERNANKDKGIEDSSDRRQLTGPSILWLPLAQAVLPERESVAKKCSRFVLLVWLGLAFVLMQSYTANLSSILTLDQLKPSHPTIDSLIRDKENVGYRHGSFIRDLLRDHLHFDESRLKNYSKMEDYRNALSKGTPKGGIAAMFDELPYIKVFLKKHGSKYMMTGPTYRNHGFGFAFPLGSNLTSHFSRAILNVTESPTMNMIEEKYFGVNYDDLQDQYDQLSSETASLTAQSFAGLFIIAGSLILLALLVSESHIWKRPVMLVKTLSQKYLFSASSRKVNPSDDGSTNERDAGATT 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00672 296 Gene3D - 154 213 - -
Bva02g00672 296 SMART GluR_14 17 209 IPR001320 GO:0015276|GO:0016020
Bva02g00672 296 MobiDBLite consensus disorder prediction 276 296 - -
Bva02g00672 296 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 286 - -
Bva02g00672 296 Gene3D - 2 103 - -
Bva02g00672 296 Pfam Ligand-gated ion channel 16 241 IPR001320 GO:0015276|GO:0016020
Bva02g00672 296 Pfam Bacterial extracellular solute-binding proteins, family 3 60 208 IPR001638 -
Bva02g00672 296 Coils Coil 211 231 - -
Bva02g00672 296 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 286 - -
Bva02g00672 296 SUPERFAMILY Periplasmic binding protein-like II 62 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00672 Bva-Chr2 9629282 9631866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00672 26 269 Ion Channels AT2G29100 40.385 4.71e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00672 K05387 - aip:107641909 294.278