Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00671 ATGGCAGAGTCATACTATTctgtttatcttttcttttctcttgctttcTTAGGTGCCCAGTTTCTTGTAAGGGCTAATCCTCAACTATTAGGAGGCAAGATGTTGAAAATTGGGATACCCATCAAAACTGACTTTAACGAGTTTGTGGATGTTAAACTGGATAGAACAAACCAGGCCATACAGAACCACGTTAGTGGGTACTCAATTGAAGTTTTCTTTGCTGCTGTATCTTATCTGGAAGGGCATTTAGGCCTAAATGTTTCTTATGAGTTTGAAGCTTTTGTAAACAAAGAGGGAAAGATTGCTGGCACTTACGAGGATCTTCTGCATCAAATTCCTGAAAAGAAGTATGATGCCGTGGTGGGCGATGTAACTATTGTCGCAAATCGTACAACCTATGTAGACTTTACAATGCCGTATGCGGAATCAGGAGTGAAGATGCTTATACAAGTTAGACATAGTCACCACTTAGATATGTGGAACTTTCTGCAGCCATTTAGTTGGGATCTTTGGCTGTCCACCATCATATTTTGTGTCTTTATAGGATTTGTGCTGTTAGTCATGGAACGTAATGCTAATAAAGAAGCTCGAATGGAAGATTCACCAAGTCAAAAACAACCTACTGTTCTATCAATTTTATGGCTTCCTGTAGCTCATGCGGTGTTCCCTGAAACATCTGTTGCCAAGAAATGCTCTAGGTTTGTACTGTTGGTGTGGTTAGGGTTGGCATGCCTTCTCACGCAAAGCTACACAGCAAATTTGTCCTCAATCTTAACATTAGATCAACTACAGCCAAGTTATCCTACAATTCAAAGTCTAATAAGAGACCAAGAAAATGTTGGATACCGGCACGGTTCTTTCATAGGAGATTTCTTAAGGGATTGCTTACACTTTGATGAATCAAGACTTAGAAATTACTCCAAAATGGAAGATTATTGCAATGCCTTAAGCAAAGGAACTCAAAAAGGAGGTATTGCGGCTATGTTTGATGAGTTGCCCTACTTTAAAGTCTTCCTCAAAAGGCATGGCTCCAAGTACATGATGGCTGGACCTACCTATCGGAACgatggttttggttttGCATTCCCACTAGGTTCCAACCTTACCCGATACTTCTCAAGGGCCATACTAAACGCACTTCAAGATCCAACAATAGAtattattgaagaaaaatactttgGCATCAATCGTGATGATCTCCAAGATCAAATATCATCAGAAACTCCCAGCCTCACCACACGGAGCTTTGCAGGCCTGTTCATAATCACTGGATCCCTTACCTTATTAGCTTTGCTAGTCTCTGAAAGCTTTATTTGGCGAAGGCCAGTTATGGTGGTCAAAACTATCAGCAAAAAATATCTAGTCTCCTCAAGTTCTAAAAAAGTGAATCCATCAATCGATGGTTCTAATACTAATGGAAGGTACGCTGGTTCAaccaatgaagaaaataatcatCCAGAAAGACTTCCAAGATCTCGTTCATTTCATCTATA 1493 0.3825 MAESYYSVYLFFSLAFLGAQFLVRANPQLLGGKMLKIGIPIKTDFNEFVDVKLDRTNQAIQNHVSGYSIEVFFAAVSYLEGHLGLNVSYEFEAFVNKEGKIAGTYEDLLHQIPEKKYDAVVGDVTIVANRTTYVDFTMPYAESGVKMLIQVRHSHHLDMWNFLQPFSWDLWLSTIIFCVFIGFVLLVMERNANKEARMEDSPSQKQPTVLSILWLPVAHAVFPETSVAKKCSRFVLLVWLGLACLLTQSYTANLSSILTLDQLQPSYPTIQSLIRDQENVGYRHGSFIGDFLRDCLHFDESRLRNYSKMEDYCNALSKGTQKGGIAAMFDELPYFKVFLKRHGSKYMMAGPTYRNDGFGFAFPLGSNLTRYFSRAILNALQDPTIDIIEEKYFGINRDDLQDQISSETPSLTTRSFAGLFIITGSLTLLALLVSESFIWRRPVMVVKTISKKYLVSSSSKKVNPSIDGSNTNGRYAGSTNEENNHPERLPRSRSFHL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00671 497 SMART GluR_14 34 395 IPR001320 GO:0015276|GO:0016020
Bva02g00671 497 Pfam Ligand-gated ion channel 395 424 IPR001320 GO:0015276|GO:0016020
Bva02g00671 497 MobiDBLite consensus disorder prediction 459 483 - -
Bva02g00671 497 Gene3D - 359 393 - -
Bva02g00671 497 Gene3D - 315 358 - -
Bva02g00671 497 Gene3D - 160 296 - -
Bva02g00671 497 Pfam Bacterial extracellular solute-binding proteins, family 3 101 394 IPR001638 -
Bva02g00671 497 MobiDBLite consensus disorder prediction 459 497 - -
Bva02g00671 497 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 464 - -
Bva02g00671 497 SUPERFAMILY Periplasmic binding protein-like II 14 395 - -
Bva02g00671 497 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 4 464 - -
Bva02g00671 497 CDD GluR_Plant 33 393 - -
Bva02g00671 497 Gene3D - 28 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00671 Bva-Chr2 9595256 9598154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00671 32 497 Ion Channels AT2G29100 37.449 1.25e-80 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00671 K05387 - aip:107641909 456.447