Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00660 ATGGCAAAGTCATACTATAGTGtttatctttctcattttctttccttcttagTGGCCCAGTTTGGGGTAGGGGCTGCTGCTGCACTTTTAGGAGGAAAGACATTGAAGATTGGGGTACCCATGAAACCTGATTTCACCGAGTTTGTCGATGTGAAACTGAATAGCACAAACCAGACGATACAGAACCAGGTTACTGGGTACTCAATTGACGTTTTCAAAGCTGCTGTATCTTATCTGGAAGGGTCAGGGTTACatgtttcttttgtgtttgaaGCTTTTGTAGACAGAGAGGGAAAAAGTGCAGGTACCTACAGCCAACTTTTGCAACAGATTCCTCAAAAGTATGATGCTGTAGTGGGCGATGTAACTATTGTGGCAAAGCGATCAACCTTTGTAGATTTTACATTGCCATATGCAGAATCAGGCGTGAGAATGCTCATACGAGTTAGACATAATCGCCACTTAGATATGTGGATCTTTCTGAGGCCATTTAGTTGGGATCTTTGGCTATCCATTATCACATTTTGTATCTTTATAGGATTTGCACTATTGTTCATGGAACGTAATGCAAAGAAGgatgaaagaattgaagattCATCAAGTCGAAAACAAGTTGCTGGACCATCAATTATATGTCTTCCTATAGCTCAAGCTGTCCTTCCAGAAAGAGAATCGGTTGCCAAGAAATGCTCTAGGTTTGTATTGTTGGTGTGGCTAGGGTTAGCATTCATTCTTATGCAGAGCTACACAGCAAGTTTGTCCTCAATCTTGACATTAGATCAAATAAAGCCAAGTTACCCTACCATCGATAGTCTAAAAAGAGACCATGAAAATGTTGGATACCGGTGCGGTTCTTTTGTAAGAGATCTTTTAAGAGATCACTTACAGTTCGATGAATCAAGGATTAAAAATTACTGCAAGAATAAAGATTATCGTGACGCATTAAGTAAAGGAACTCAAAATGGAGGTATTGCTGCTATGTTCGATGAATTACCCTACATTAAAGTCTTACTCAAAAAGTATGGTTCCAAGTATATGATGGCTGGACCAACCTATCGGACTGATGGCTTTGGTTTTGCATTCCCACTAGGTTCCAACCTTACGTCTTACTTCTCAAGAGCCATATTAAATGTTACTCAAGGACCAATAATGGATGAGATTGAAGATAAATACTTTGGCAACAATCAAGATGATCTGCAAGATCAGTATGACCAAATATCAGAAGAAACTCCAAGCCTCACCACACAAAGCTTTGCAGGCCTGTTCATAATCACTGGATCCCTTATCATACTAGCTTTGCTAGTCTCAGAAAGATGTGTTTGGCAAAGGCCTGTTATGCTGGCTAAAAGTTTAAGCCAAAGAATATCCTCAAGTTCTGCAAAAATCAATCCATCGTTGCCTCTATA 1406 0.3826 MAKSYYSVYLSHFLSFLVAQFGVGAAAALLGGKTLKIGVPMKPDFTEFVDVKLNSTNQTIQNQVTGYSIDVFKAAVSYLEGSGLHVSFVFEAFVDREGKSAGTYSQLLQQIPQKYDAVVGDVTIVAKRSTFVDFTLPYAESGVRMLIRVRHNRHLDMWIFLRPFSWDLWLSIITFCIFIGFALLFMERNAKKDERIEDSSSRKQVAGPSIICLPIAQAVLPERESVAKKCSRFVLLVWLGLAFILMQSYTASLSSILTLDQIKPSYPTIDSLKRDHENVGYRCGSFVRDLLRDHLQFDESRIKNYCKNKDYRDALSKGTQNGGIAAMFDELPYIKVLLKKYGSKYMMAGPTYRTDGFGFAFPLGSNLTSYFSRAILNVTQGPIMDEIEDKYFGNNQDDLQDQYDQISEETPSLTTQSFAGLFIITGSLIILALLVSERCVWQRPVMLAKSLSQRISSSSAKINPSLPL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00660 468 Pfam Bacterial extracellular solute-binding proteins, family 3 61 394 IPR001638 -
Bva02g00660 468 CDD GluR_Plant 33 392 - -
Bva02g00660 468 Gene3D - 158 289 - -
Bva02g00660 468 SUPERFAMILY Periplasmic binding protein-like II 17 395 - -
Bva02g00660 468 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 455 - -
Bva02g00660 468 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 455 - -
Bva02g00660 468 Gene3D - 27 157 - -
Bva02g00660 468 SMART GluR_14 34 394 IPR001320 GO:0015276|GO:0016020
Bva02g00660 468 Pfam Ligand-gated ion channel 395 426 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00660 Bva-Chr2 9393650 9396208 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00660 32 435 Ion Channels AT2G29100 41.235 1.19e-82 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00660 K05387 - aip:107641909 470.314