Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00572 ATGGAAAGTTATACTAAATCGACTACTCGGAAGGCtattagaagaataaaaatggtCAATATTGATTTTCCAGATTTAGAATGGACAGATAAGATTAAGGATTGTCCTGTGTATTACCCTTCCGAACAAGAATTTGAGGATCCACTGGATTACCTGCAGAAGATTGCCAATGAGGCTTATCCATACGGAATATGCAAAATTGTTTCTCCCGTGAAAGCTTCGATTCCAGCTGATGTTGTTTTGAAGGATTTCAGGTTTATGACTCACGAACAGCCTCTTCGGCTTTCAAAATGGAACGAGAAGGACTTTATAGTCTATAAACGTGGAAGAGAATACACTTATTCTGAATTTCAAGCTGTAGCAGGCAAAACCTTCCGCAATCAATTTGATGATTCTGAAGATACTCCTTCTGCATCATATGTAGAAAAGACGTTCTGGAAGGAAATGGCAAATGGAAAGAAGGGAACAGTGAAATATGGAGTCAATCTTGAAGGAAGTGCCTTTTCATGTGATCCTGATGACAAACTTGGGAAAAGCAAGTGGAACCTCAAGAATTTCTCTCGGCTGAAAAAATCCATATTGCGATTCATTCAAACACCAATTCCTGGAGTAACCGATCCCATGCTTTACATTGGAATGCTCTTCAGCATGTTTGCATGGCATGTAGAGGATCAATATCTCTACAGTATTAGCTATCTCCACACAGGTGCATGTAAAACTTGGTATGGTGTGCCTAGTCATGCAGCTTCTGACTTTGAAAATACCGTCAGAAATCATGTGTATTGCACGGATATCTTAATGGAACACAGTGAAGATTCTGCTTTTGAATTGCTTTCCAAGAAAACAACCATGTTTCCTCCTCAAATCTTGTTAAATCAACGCGTGCCGGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTCATAACTTTTCCTAGAGCATATCATGCTGGATTCAGTCATGGGTTCAACTGTGGAGAAGCAGTAAACTTTGCTGTTAGTGGTTGGCTTCCATTTGGGGAGAAAGCTACCAAGCGTTATGGAAATCTAAGGATGCCACTTGTTGTTCCCTTTGAGGAACTTCTTTATAAAGGGGCAATGCACTTTCCCAACTCCCCAACTATAAATCGTTTTGCATGCATGTACTTCTATAAGAACCTTATACGTATAAGGAACTTACCCTGTCTTTCAAATTCTCTAGGCACCGTTTGTAGCAGAGCTGccaacaagagaaagagagaggctAGTTTGGAACTCAACACAGAAAATAGCAACAGGATTTTGAAGAAGCAtta 1295 0.3892 MESYTKSTTRKAIRRIKMVNIDFPDLEWTDKIKDCPVYYPSEQEFEDPLDYLQKIANEAYPYGICKIVSPVKASIPADVVLKDFRFMTHEQPLRLSKWNEKDFIVYKRGREYTYSEFQAVAGKTFRNQFDDSEDTPSASYVEKTFWKEMANGKKGTVKYGVNLEGSAFSCDPDDKLGKSKWNLKNFSRLKKSILRFIQTPIPGVTDPMLYIGMLFSMFAWHVEDQYLYSISYLHTGACKTWYGVPSHAASDFENTVRNHVYCTDILMEHSEDSAFELLSKKTTMFPPQILLNQRVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAVSGWLPFGEKATKRYGNLRMPLVVPFEELLYKGAMHFPNSPTINRFACMYFYKNLIRIRNLPCLSNSLGTVCSRAANKRKREASLELNTENSNRILKKH 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00572 431 ProSiteProfiles JmjC domain profile. 178 348 IPR003347 -
Bva02g00572 431 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 5 372 - -
Bva02g00572 431 Pfam jmjN domain 36 68 IPR003349 -
Bva02g00572 431 PANTHER LYSINE-SPECIFIC DEMETHYLASE 5 372 - -
Bva02g00572 431 SMART cupin_9 175 348 IPR003347 -
Bva02g00572 431 SMART JmjN_1 34 73 IPR003349 -
Bva02g00572 431 Pfam JmjC domain, hydroxylase 208 331 IPR003347 -
Bva02g00572 431 Gene3D Cupin 29 352 - -
Bva02g00572 431 SUPERFAMILY Clavaminate synthase-like 134 368 - -
Bva02g00572 431 ProSiteProfiles JmjN domain profile. 35 76 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00572 Bva-Chr2 7414783 7417009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00572 11 366 JUMONJI Transcription Factor Family AT2G34880 34.293 6.11e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva02g00572 JmjC 9.4e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00572 - - gmx:100809650 491.5