Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00570 ATGCAAGATCAACCTTTGGTTGAAAATCTTATACAAGATGGTAATGGTGACCCAAATGAAAACGAGATGTGTCAATTAACTAAGCCGGAGGACGACCACGAGCGTGTGCCACTGGCCAACGTGGCGAGGATAATGCGTCAAGTTCTTCCACCGCATGCAAAAATATCCGACGACGCCAAAGAAACTATTCAAGACTGTGTTTCTAAGTACATCGGCGTAATTACTGGTAAAGCCAACAAACGGTGCTGCGACGAGAGCCGTGTGAAGGTAACAGCTGAGGATGTGCTGCTGGCAATGGAGGAACTTAAACTGGACCAGTATGTGGATCCTCTCAAAGTTTTCATGACTCGATACCGTGAAAATGAGAATGTCAGCTCTCGCATGCATGGGAATGGCGGGAAGAGGAGCAGCTGCTACCCTGATGACTATTGGCCTCCAACTGGGCTTCCTCAAACATTGGAAGCTAGTTATGGACCTCAAAATGGGCTTCCTTCGACAATGTTGGGTACTTATAGGCCACCATCTCCTATGGGCCCAAATCAAAATTGCAGTGTTTTCGATCCTATGGCTATGACCAGCTTTTCGGGTGGTGTTGGGAGTTCATCTATTCTGGATACTTCGGCTAATTTTGATCCCTTTGCTCACTTCAAACAAGATGGTATAGACAGTTTTACTAGAAACTA 683 0.4597 MQDQPLVENLIQDGNGDPNENEMCQLTKPEDDHERVPLANVARIMRQVLPPHAKISDDAKETIQDCVSKYIGVITGKANKRCCDESRVKVTAEDVLLAMEELKLDQYVDPLKVFMTRYRENENVSSRMHGNGGKRSSCYPDDYWPPTGLPQTLEASYGPQNGLPSTMLGTYRPPSPMGPNQNCSVFDPMAMTSFSGGVGSSSILDTSANFDPFAHFKQDGIDSFTRN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00570 227 Gene3D Histone, subunit A 23 138 IPR009072 GO:0046982
Bva02g00570 227 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Bva02g00570 227 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Bva02g00570 227 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Bva02g00570 227 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Bva02g00570 227 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 17 133 - -
Bva02g00570 227 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 133 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva02g00570 227 SUPERFAMILY Histone-fold 35 155 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00570 Bva-Chr2 7374033 7376222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00570 5 178 CCAAT-HAP3 Transcription Factor Family AT1G21970 43.407 1.01e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva02g00570 CBFD_NFYB_HMF 2.8e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00570 K08065 - qsu:111993144 142.895