Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00561 atgggCAATTGTGGTACCCGAGAGGAGTCCGCTGTTGTCTCCAATGCTCAAGTTGAGCAGGTGCACATGTCGAGAAATGAGAAGAAACACAATCGTTCAGTGTCAGATCTGAGCGACTCTTCAACCTCGCGCATCAACTTAGAGGATGCGAGGAAGAACACAGTCCTGTATACACAATTCATTGCTTTTACCTTGTACGAGCTTGAGACTATCACTAAGAGCTTCCGCTCCGACTATATCCTCGGAGAAGGTGGCTTCGGCACTGTCTATAAAGGTTACATTGATGAGAATGTGAGGGTTGGCCTCAAATCTCTCCCTGTTGCCGTCAAGGTTCTCAACAAGGAAGGTCTTCAGGGACATCGAGAGTGGCTTACGGAAGTCAATTTTCTCGGGCAACTCAGGCATCCTAATCTCGTTAAGTTGATTGGGTACTGCTGTGAGGACGATCACAGGTTACTCGTATACGAATTCATGTTCCGTGGAAGTCTGGAGCATCACTTATTCCGAAAGGCAACTGTTCCTTTATCATGGGCTACAAGAATGATGATTGCCCTGGGAGCTGCCAAAGGGCTTGCTTTTCTCCATAATGCTGAAAGACCTGTAATCTATCGGGATTTTAAAAcatctaatatattattggaCTCTGACTATACAGCCAAGCTTTCTGACTTTGGACTAGCTAAAGCTGGACCACAAGGTGACGAAACCCATGTATCCACTCGTGTCATGGGTACTTATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACTTGACAGCAAGGAGTGATGTGTATAGCTTCGGTGTTGTTCTTTTGGAGCTTTTAACAGGAAGGAAGTCTGTTGACAAGACAAGACCAGGCAAAGAACAGAACCTGGTAGATTGGGCTCGACCAAAGCTTAATGATAAGAGAAAGCTCCTGCAAATAATAGATCCTAGATTGGAGAACCAATACTCTGTGAGGGCTGCACAGAAAGCATGTAGCTTGGCTTACTACTGTTTGAGTCAAAATCCCAAAGCAAGGCCATTAATGAGTGATGTAGTTGAGACATTGGAACCTTTACAAAGTTGTAGTGATGGTGCAAGTGAAGTCTCAACATTTGGAACAAATAGTGGAGGTCGCGGCCCCTTTGCTATGAACGGAATCTCTGACTACAGGATGCGTCAGAGGTTTCCAAACAATGTTGGTCCAGGTGCTAGTTGTCGGTCTCCAAATCCAAATTGCTCACCAGGTGCCCCTGCAGCATGCAGAGTCAGATG 1262 0.4517 MGNCGTREESAVVSNAQVEQVHMSRNEKKHNRSVSDLSDSSTSRINLEDARKNTVLYTQFIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLEHHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQNLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSCSDGASEVSTFGTNSGGRGPFAMNGISDYRMRQRFPNNVGPGASCRSPNPNCSPGAPAACRVR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00561 420 SUPERFAMILY Protein kinase-like (PK-like) 53 353 IPR011009 -
Bva02g00561 420 Gene3D Phosphorylase Kinase; domain 1 34 157 - -
Bva02g00561 420 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 18 407 - -
Bva02g00561 420 Pfam Protein tyrosine and serine/threonine kinase 80 352 IPR001245 GO:0004672|GO:0006468
Bva02g00561 420 MobiDBLite consensus disorder prediction 20 39 - -
Bva02g00561 420 ProSiteProfiles Protein kinase domain profile. 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g00561 420 MobiDBLite consensus disorder prediction 397 420 - -
Bva02g00561 420 CDD STKc_IRAK 81 355 - -
Bva02g00561 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Bva02g00561 420 Gene3D Transferase(Phosphotransferase) domain 1 158 367 - -
Bva02g00561 420 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Bva02g00561 420 PANTHER OS01G0588500 PROTEIN-RELATED 18 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00561 Bva-Chr2 6708157 6712495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00561 26 368 Glycoside Hydrolase AT3G07070 50.000 2.01e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Bva02g00561 PK_Tyr_Ser-Thr 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00561 - - qsu:112023960 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00561 02 6708157 6712495 Bva02g00561 02 6708157 6712495 ECH