Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00546 ATGGCTGCAAATTCTGAGAGTATCTCATCTGCCTTACCTCAGTCGACGCCACAAATTCTTGTGGATACTGGTCTGCTATCTGACCATTCTATCCAGATTGCAGAATGTACTCTCTGCCAAAAAGCCCTATCACCTGATAATGAGGTAACAAGTGATCTTGCACCTGGTGGTCTATGTGGAgattgtaaatttttgttgCTTGAAGACTTTGGGACCCCCATCCAAAGCTCTCGGAGAAGGAACAGAGGAAGATTTAGGTACAGCAGTTCTGAATCAATTGATAACTTATCAAGACAGCTTCCACATACTGCGAGGCGAGGCCAAGACACTGTATCCATGGAAGATGATCAACATGTTGATGGTGATACTGATGCTTGGTTATTGCAGTGGGCAAGTACCCATCCTACCCCTGGTGGGTCTAGAAGATGGAGACAGGTTTTCTCTGATACAGATAGTGACGGTTTTGATAATTGGAGTTCTCTTTATGGCGATAATGAatcaaatgataattttttaaggtaTAGGGCGTCCTATGGGGAGAATGATTCTTTCTCCTTGAGTGCTTATGGGGGTGAGTCAGATGTCTCTATGGATAGACATAGTTTTGTAGGTACAGGAATGTTTAATTTACCAGATGAGGGAGATGAATTTGATAGTGACACTGATATAGATCCAATGAATGCTGGGCTTGGCCAATGGAACTCAGATGATGACGAAGATGAGGAAGACGAGGGTGAAGAAGGAGAGGAGGAGGAGGGGGAGCAAAGGGATTGGGATGTAGGTGAGGCTGAGGAAGCTGAAGCAACAAACCGTCTCCAAATTCTTTTCGCCTCGAGCTCAAGTGAGAACAGTGGCCCCATTAATTGGGAACAACAGATCAATTCTCCTGAATCTGAGAGAATACTTAGCCGAAGAGTTAGGGACAGCTGGCAAACTCACTATGGTCACAATTTTTCTAACTTGGACGAGACTGATTTACCACCTTATGGGGCAAATTTTGGAGACTACCTTGATGCTAGGCAGTTTGAAGAGTTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCCCCACCAGCAGCTGTGTCTTTTGTAAATAGCCTGCCCCTTGTTGTCATCAGCAAGGAACACGAGCAGCATGAAGAATTAGTGTGTGCTATTTGCAAGGATGGCTTAACCTCAGGTACCGAAGCAAATAAGCTTCCCTGCTTGCACCTTTATCACCCCTGCTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCCCTATGCCGATATGAACTTCCAACTGACGATAAAGATTATGAAGAGGGAAAGCGAAACAATGGTGGTACAAATGAGATCCGTGAAATAGAATCGCTAGATGTGATGGATGAGAGTTCCTCTGATGTCTCTGATGGAACTGAAGCAAATGAAGAGGATGTTAGCAGTCAAGGTGGAATACAGCAGAGAGAACTTGTGGACATGGGTTCTGTTATAAATCCTCCTGTAGTAAGAAGTGGTAGAGGACGATGGTTTTTACTTGCTGCTGCTCCAATTGTTAGTCTTGTGGGCATTGTTCTTGTCCTGTGGTTAGGTAACCCTTTAACTGAAGGAAGTAGACGACTGGGCCGCTGCAACTTTCCTGTGCAAAATGGGCATCAAATTTGTGTTAATGCATCTCCTAACCAAAGGGAGAATAGAAGCAGAAGATGGTGGTCCCTTTTCTA 1718 0.4406 MAANSESISSALPQSTPQILVDTGLLSDHSIQIAECTLCQKALSPDNEVTSDLAPGGLCGDCKFLLLEDFGTPIQSSRRRNRGRFRYSSSESIDNLSRQLPHTARRGQDTVSMEDDQHVDGDTDAWLLQWASTHPTPGGSRRWRQVFSDTDSDGFDNWSSLYGDNESNDNFLRYRASYGENDSFSLSAYGGESDVSMDRHSFVGTGMFNLPDEGDEFDSDTDIDPMNAGLGQWNSDDDEDEEDEGEEGEEEEGEQRDWDVGEAEEAEATNRLQILFASSSSENSGPINWEQQINSPESERILSRRVRDSWQTHYGHNFSNLDETDLPPYGANFGDYLDARQFEELLEHLAENDSSRRGAPPAAVSFVNSLPLVVISKEHEQHEELVCAICKDGLTSGTEANKLPCLHLYHPCCILPWLSARNSCPLCRYELPTDDKDYEEGKRNNGGTNEIREIESLDVMDESSSDVSDGTEANEEDVSSQGGIQQRELVDMGSVINPPVVRSGRGRWFLLAAAPIVSLVGIVLVLWLGNPLTEGSRRLGRCNFPVQNGHQICVNASPNQRENRSRRWWSLF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00546 572 MobiDBLite consensus disorder prediction 210 260 - -
Bva02g00546 572 MobiDBLite consensus disorder prediction 435 459 - -
Bva02g00546 572 PANTHER OS06G0101300 PROTEIN 325 495 - -
Bva02g00546 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 434 IPR013083 -
Bva02g00546 572 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 325 495 - -
Bva02g00546 572 SUPERFAMILY RING/U-box 368 434 - -
Bva02g00546 572 Pfam Ring finger domain 387 428 IPR001841 -
Bva02g00546 572 MobiDBLite consensus disorder prediction 234 260 - -
Bva02g00546 572 ProSiteProfiles Zinc finger RING-type profile. 387 428 IPR001841 -
Bva02g00546 572 SMART ring_2 387 427 IPR001841 -
Bva02g00546 572 MobiDBLite consensus disorder prediction 435 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00546 Bva-Chr2 6635036 6638429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00546 26 572 C3H Transcription Factor Family AT5G01980 43.162 1.09e-123 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00546 - - gmx:100800933 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00546 02 6635036 6638429 Bva02g00546 02 6635036 6638429 ECH