Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00543 ATGATGCTCGTGTCTGTAAGAATGAGAGGTGACACATGTGCATGTCGTGGGGGAGTCGTTATGCGTGACATCATTGGCATGATATGGGCATGGGGCATAGAATTAGCCAAGAACGAGAAAGCAACAGTGTCCGCGGAGTTTCGCCTTCGAAGGGTTAGGGCGTTAACGCCTATGGAAGCGTCTGGTGCCAGCCCCGACATGTTCAGAACTTCTTCCGGAACTTCTAATTCAAGAAGATATGGGACTTTGTCTGTCTCTAATATAATTCAGGCACCCTTGTCTTTGTTGTTGGAGTATTCGGGTATTCTGCGAAGCAGGTCCAATCACCAAGAAAACGAGGGCTTGATCAATGATCGACTCTCTAATGGATTCCGTGACCATCTTCATAGTCGCCTTGAAGAACCTTCGGCAATTTCCAATGATGGGGAGGTGTCCATCAGGATTATTGGTCCTGGTGAACAAGACCTTGATAGGGAAGGCAATGGTTCGGTGGTTGGTCAGACCAGGGAGGCACTTTCCCCGAATGATGTTTCCGCTCAATCTTTGCCTGGGATGCCCTCCACAACACTGCTACGTTCTTCGGAGAGTCAGGCAGAATCAAGGACTGATCGTGTTGCAGGAGAGGGTGATTCCCAATCTGTGAATGCAACTGCGGATACAGAAGCAGGTGATGGAGTTGGGGCCAATGGTAGGGATTCTTCTTACCAAAGATACGATATTCAGCAGGCTGCTAGGTGGATTGAGCAGGTCTTGCCTTTCTCTTTACTGCTGTTGGTCGTCTTCATACGGCAGCATTTACAAGGCTTCTTTGTTACAATTTGGATTGCTGCTGTTCTTTTCAAGTCCAATGATATTCTACGGAAACAGACAGCTCTGAAGGGAGAGAGGAAAATTCCTGTGCTAGTTGGCATTTCTATTGCATTTGCTTTTCACGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTGTTGTATCCTCTGATTATGCTTCCTCCCAAAGCTATACCTCCTTTCTGGCATGctatttttatcatcatgGTGAACGATACTTTAGTCCGCCAGGCAGCGATGGTACTCAAGTGTATTTTGTTGatgtattataaaaatagcAGAGGTCGAAGTTATCGTAAGCAGGGGCAAATGCTGACTTTGGTTGAATACTTGCTTCTGCTTTACCGTGCATTGTTGCCAACACCAGTATGGTATCGTTTCTTCTTGAACAAAGAATATGGGAGCCTCTTTTCCTCACTAATGACGGGATTGTATTTAACATTTAAGCTTACATCTGTTGTTGAAAAGGTGCAATCATTCTTTGCTGCTGTCAAGGCATTGTCACGCAAAGAAGTGCACTATGGGATTTATGCAACATTAGAGCAGGTCCATGTAGCTGGCGATCTTTGTGCTATATGCCAGGAGAAGATGCATGCCCCTATCTTACTTCGTTGTAAACATATCTTCTGCGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGATCTCAGATCATTTGGTGATGGTTCAACCAGTCTGTTCTTtcagttatttta 1589 0.4462 MMLVSVRMRGDTCACRGGVVMRDIIGMIWAWGIELAKNEKATVSAEFRLRRVRALTPMEASGASPDMFRTSSGTSNSRRYGTLSVSNIIQAPLSLLLEYSGILRSRSNHQENEGLINDRLSNGFRDHLHSRLEEPSAISNDGEVSIRIIGPGEQDLDREGNGSVVGQTREALSPNDVSAQSLPGMPSTTLLRSSESQAESRTDRVAGEGDSQSVNATADTEAGDGVGANGRDSSYQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLVGISIAFAFHVVGVYWWYQNDDLLYPLIMLPPKAIPPFWHAIFIIMVNDTLVRQAAMVLKCILLMYYKNSRGRSYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGIYATLEQVHVAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00543 529 MobiDBLite consensus disorder prediction 170 230 - -
Bva02g00543 529 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 58 529 - -
Bva02g00543 529 Pfam Zinc finger, C3HC4 type (RING finger) 466 509 - -
Bva02g00543 529 MobiDBLite consensus disorder prediction 170 196 - -
Bva02g00543 529 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 58 529 IPR044235 GO:0061630|GO:1904294
Bva02g00543 529 SMART ring_2 468 505 IPR001841 -
Bva02g00543 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 516 IPR013083 -
Bva02g00543 529 CDD RING-HC_RNFT1_like 467 506 - -
Bva02g00543 529 ProSitePatterns Zinc finger RING-type signature. 483 492 IPR017907 -
Bva02g00543 529 ProSiteProfiles Zinc finger RING-type profile. 468 506 IPR001841 -
Bva02g00543 529 SUPERFAMILY RING/U-box 457 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00543 Bva-Chr2 6617537 6623140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00543 58 529 C3H Transcription Factor Family AT5G01960 69.556 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00543 - K22379 fve:101297163 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00543 02 6617537 6623140 Bva02g00543 02 6617537 6623140 ECH