Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00500 ATGCGTCGGCGTCTACTTGACAAAGAGCTAACCATAGCACCCGCGGCAGATAGAAACAACACTGGCGATTCATTCGCAAGCGACTCTAACTTCGACACAAACATGGTGATCGTTTTGGCAGCTCTTTTGTGTGCACTAATATGCGCTCTTGGGTTGAACTCAATTGTGCGCTTTGCTCTCAGTCGTCGACGTAGATTTTCCATTGAGGCACCACATCAAACAGTTGCTAAGGGATTAAAGAAGGGAGATTTGAGTCAGATTCCGGTGGTAGTTTACGGTTCCGGCATAGATATTCCAGCGACGGAGTGCCCAATTTGTCTTTCTGAGTTCCAGAAGGGTGACAAGGTGCGAATGCTGCCAAAATGCAACCACGGGTTCCATGTGAGGTGCATAGACACATGGCTGGAATCACATTGTTCTTGCCCGAATTGTCGCCATTCATTACTTGAACAACAGTA 458 0.4738 MRRRLLDKELTIAPAADRNNTGDSFASDSNFDTNMVIVLAALLCALICALGLNSIVRFALSRRRRFSIEAPHQTVAKGLKKGDLSQIPVVVYGSGIDIPATECPICLSEFQKGDKVRMLPKCNHGFHVRCIDTWLESHCSCPNCRHSLLEQQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00500 152 PANTHER RING-H2 FINGER PROTEIN ATL74 1 151 - -
Bva02g00500 152 SMART ring_2 103 144 IPR001841 -
Bva02g00500 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Bva02g00500 152 CDD RING-H2_EL5_like 102 145 - -
Bva02g00500 152 Pfam Ring finger domain 102 145 IPR001841 -
Bva02g00500 152 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 151 - -
Bva02g00500 152 SUPERFAMILY RING/U-box 84 151 - -
Bva02g00500 152 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00500 Bva-Chr2 6366583 6371791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00500 1 152 C3H Transcription Factor Family AT3G10910 55.152 5.47e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00500 - K19040 cit:102625542 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00500 02 6366583 6371791 Bva02g00500 02 6366583 6371791 ECH