Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00490 ATGGCGATTTCTCCTCAAGGTTTCCTGCCCAGAAAACGGCGGCCATCGGCGACGTCGTTTATCTCTCCCAGATTCACAGAGCTTAACCTCCTCCAATCTCTTCTCCAACTAACCCATgaaatttcttctctcaaaCCAATTAATTTCATCCTTAAGCGCAATTCCTCTTCCATCATTCGCAAAACCAAGCtcttaaacattttatttgaagagCTGATTCGCTGTTCAAACCCAGTTTTTTCCCACTCCTTCGTGCTCTGTTTTGAAGAAATGTACATGGTGTTGCAGAGAATCAAAACCCTTATTGAAGACTGCTATGACGGAAGCAGCAAGATGTGGCTGCTGATGCAAAACCACACCGTTGCTGAAAGTTTCCACAAACTCACCGCAGATTTATCGACGCTTTTAGATATCTTCCCTGTCAATGAACTCGACTTAAACGATGACGTTCCAGAACTCGTGATCCTAATCAGAAAACAATGCTCTGAATCGAAGCCCTCCATGGATCCCAGAGATAACGAGCTCAAGGGCAAGGTGATAACCATGCTTGATGGAATTAAGAGAGAGATTGTTCCAGAACCTTCTAAACTTTCTGAGATTTTCGATGGTTTAGAAATTCGAGACTCTTCCAGTTGCAGAGCCGAAATTGAGAACTTGGAAGAGGAAGTTCAGAACAGAAACTACGAGCAATCCAAATCGGAGATTGTTGCTTTGATTGGACTCGTTCGATATGCCAAATGCGTTCTCTTTGGAGCATCTACGCCGTCGCCGCGCATTGAGACCCGGCACCGGAAACAACCCTCGGAAATTGTTATTCCAACAGATTTTAAGTGTCCGATAACTCTAGAGCTCATGCGGGACCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGGGAGTCAATCAACATGTGGATTGCATCTGGTCATAACACGTGCCCCAAGACAGGTCAGACTCTGGCCCACACGGACCTCATCCCTAATCGCGCGTTGAAGAATCTAATAGCTATGTGGTGCCGTGAGCAGAAAATCCCGTTTGAAACAGCGACTGGGAACGAGAAATTTGGCGGCGTTATGACGAACAAGACCGCGTTGGAAGCTAACAGAATGACGGCGGCGTTTCTGGTCAACAAGTTGTCTAGTTCTCCGACGATGGATGATGCAAACGCCGTCGTATATGAGCTGCGTGGTTTGGCAAAAACGGACTCCGATAGCCGGGTTTGCATAGCAGAAGCCGGAGCTATCCCTCCTCTAGTTCGTTATCTCAGCTCCGACATTGGGTCACAGAACTCGAATCTGCAGGTTAACGCCGTCACCACGATTCTCAACCTCTCCATCCTCGAGGCGAACAAAACGAGGATTATGGAGACTGACGGAGCATTAAACGGCGTTATTGAGGTGCTGCGTTCCGGGGCCACGTGGGAAGCCAAAGCCAATGCGGCGGCTACGATATTCTGCTTATCAGGTGTGCACTCGTACAGAAAAAGACTGGGTAGAAAGACACGTGTCATAAAAGGGTTAATTGACTTGGCAAGAGCTGGGCCCATAAGTGCCAAGAGGGACGCAATGGTGGCGATATTGAATCTGGCGGGAGATAGAGAGACGGTGACGAGGTTGGTTGAAGGTGGAGTGGTGGAGATGACGGTGGAAGGGATGGACAGTTTGCCGGAGGAGTCGGTGACGATCCTCCAGGCGGTGGTAAAGAGAGGTGGATTGCTTGCGATCGCCGCCGCCTACGGCAGCATCAAGAAATTGGGTGTGATATTAAGGGAAGGATCAGATACAGCCAGAGAAAGTGCGGCGGCCACACTTGTTACAATGTGCCGGAAAGGGGGATCGGAGATAGTGGCAGAGCTAGCATCGATTCTGGGGATTGAAAGAGTCACCTGGGAATTAATGGCAACTGGATCCgtgagaggaagaagaaaagcagCCACCTTGTTGCGAATTCTCCGGCGGTGGGCGGTGCGTTTAGACGAAGGTTTGACGGAAGGGATGACAACTACTATGAGCTCGGCAACAACTATGCTTCCAGCTCACTA 2042 0.4814 MAISPQGFLPRKRRPSATSFISPRFTELNLLQSLLQLTHEISSLKPINFILKRNSSSIIRKTKLLNILFEELIRCSNPVFSHSFVLCFEEMYMVLQRIKTLIEDCYDGSSKMWLLMQNHTVAESFHKLTADLSTLLDIFPVNELDLNDDVPELVILIRKQCSESKPSMDPRDNELKGKVITMLDGIKREIVPEPSKLSEIFDGLEIRDSSSCRAEIENLEEEVQNRNYEQSKSEIVALIGLVRYAKCVLFGASTPSPRIETRHRKQPSEIVIPTDFKCPITLELMRDPVVVATGQTYDRESINMWIASGHNTCPKTGQTLAHTDLIPNRALKNLIAMWCREQKIPFETATGNEKFGGVMTNKTALEANRMTAAFLVNKLSSSPTMDDANAVVYELRGLAKTDSDSRVCIAEAGAIPPLVRYLSSDIGSQNSNLQVNAVTTILNLSILEANKTRIMETDGALNGVIEVLRSGATWEAKANAAATIFCLSGVHSYRKRLGRKTRVIKGLIDLARAGPISAKRDAMVAILNLAGDRETVTRLVEGGVVEMTVEGMDSLPEESVTILQAVVKRGGLLAIAAAYGSIKKLGVILREGSDTARESAAATLVTMCRKGGSEIVAELASILGIERVTWELMATGSVRGRRKAATLLRILRRWAVRLDEGLTEGMTTTMSSATTMLPAH 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00490 680 SUPERFAMILY RING/U-box 271 345 - -
Bva02g00490 680 PANTHER U BOX DOMAIN-CONTAINING 11 664 - -
Bva02g00490 680 Gene3D - 360 577 IPR011989 -
Bva02g00490 680 SUPERFAMILY ARM repeat 375 651 IPR016024 -
Bva02g00490 680 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 664 - -
Bva02g00490 680 CDD RING-Ubox_PUB 276 318 IPR045210 -
Bva02g00490 680 SMART arm_5 402 446 IPR000225 GO:0005515
Bva02g00490 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 349 IPR013083 -
Bva02g00490 680 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Bva02g00490 680 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Bva02g00490 680 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Bva02g00490 680 Pfam Armadillo/beta-catenin-like repeat 403 445 IPR000225 GO:0005515
Bva02g00490 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 459 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00490 Bva-Chr2 6290864 6293256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00490 11 655 U-box Gene Family AT5G01830 59.168 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00490 - - tcc:18602242 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00490 02 6290864 6293256 Bva02g00490 02 6290864 6293256 ECH