Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00419 ATGATGACTAATACAGTTTCTGGAAATAAGAAATCTAGGAAGAGACGCAGTAGTGGATATGGCTCGGTGGAGGATACTCTTGAAAGGTGGAAAACGTACAACGATCAACTAGGTCATGGTGAAAAAGATGGTGTCAAAGGGCTTCAAAAGGTTCCTGCTAAAGGCTCCAAAAAGGGGTGTATGAGAGGTAAAGGTGGGCCTCAGAATTCTGATTGCAAGTACAGAGGTGTAAGACAGAGGATTTGGGGGAAATGGGTTGCTGAAATTAGAGAACCCATCAATGGGAAGCATGTGGGAAAGAAAGCTAATAGACTTTGGCTTGGCACTTTCTCTACTTCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCTAGAGCTATGTATGGCTCTTGTGCCCGTTTGAACTTTCCAGACTATAATGTGGAATCAGTAGGTTCTACTTCAAATGAATCTTCTCTGAGCAATTATGATCAAAAATCACCATGTGGGTCTGCAGAAACATCAAAAAGTGGGGAGCTTATTGAAGCTGACAAGTTGAAAGAGAGTTTTCATGAGTCTTTTGAAGAGAAACCCAATTTTTCTGAGGTTGGGATTCTGAAGGGATCAGAGGAAAAACCGAATCTTTCTGAAGTTTATGTTTCTGATATCAAAGTAGAGGGACCGAAGGAGGAGCCAATTGGTTTTGTCCATCAAATGAATGCAAAATACAGCCAAagagattttgaagaaatagGGAGAGAATCAGATCAAGTTTTCCAGCTCTCCGGCATCAATGATGGACGTTCTTCTGATACTAATGAGCATGAGATTCATGTAAAGAGTGAAGAAACAACAGGAGAAATAGAACCAGCTCGGCCAGAAAATTCCACATCTTGTGAGTTTAGTTGCTTCAATCCAAGAAATGGTTACTTGCATGACAAGCTACGAGATGAGAGTTGCAATCCAAGAAATAACAGCAGGCATTTTACCAGTGTCAGAACCGAGATGTCTTTCACGAAGAAACAGATGGAAGAAGTAATTTCCGAGATTCTGGAGCTTTGTAGCAGCAACTGCTCCAATGAAACTCGTTTTCTTTCCGAAAATGAGCATCATAAACCTTTCAATCATGTCAAAGTTGAGAAGCCAGAAATGCCAGCAGAAGACATTATACAACCTTGTGAATGCTACCCTTGGgataaatatattgatgacATGAAAGATGAACGAACATCTGAAGTTGAGGCTCTGAACTTTTCTGCTGTTGGAAACTCTAAATTGCAAGACACAGATTCCAGAAAGCGGAGGAACCTGTCTGATCTCTCCCAACAGTTACAGACATTAAATGGTCATGTGCATGGGGATTTTGATACCATCCGAGAGGCAGATCAAGAAGTGGGTCAAGATTATAGTTTCTTGAAACCTGACTATGATTTTGGCTTATTGGAAGAGCAGAAGTTACTTGATCTATGGTTTCCTCATAGAGTGAGTGTGTA 1472 0.4022 MMTNTVSGNKKSRKRRSSGYGSVEDTLERWKTYNDQLGHGEKDGVKGLQKVPAKGSKKGCMRGKGGPQNSDCKYRGVRQRIWGKWVAEIREPINGKHVGKKANRLWLGTFSTSLEAALAYDEAARAMYGSCARLNFPDYNVESVGSTSNESSLSNYDQKSPCGSAETSKSGELIEADKLKESFHESFEEKPNFSEVGILKGSEEKPNLSEVYVSDIKVEGPKEEPIGFVHQMNAKYSQRDFEEIGRESDQVFQLSGINDGRSSDTNEHEIHVKSEETTGEIEPARPENSTSCEFSCFNPRNGYLHDKLRDESCNPRNNSRHFTSVRTEMSFTKKQMEEVISEILELCSSNCSNETRFLSENEHHKPFNHVKVEKPEMPAEDIIQPCECYPWDKYIDDMKDERTSEVEALNFSAVGNSKLQDTDSRKRRNLSDLSQQLQTLNGHVHGDFDTIREADQEVGQDYSFLKPDYDFGLLEEQKLLDLWFPHRVSV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00419 490 MobiDBLite consensus disorder prediction 147 167 - -
Bva02g00419 490 Gene3D AP2/ERF domain 72 138 IPR036955 GO:0003700|GO:0006355
Bva02g00419 490 Pfam AP2 domain 72 129 IPR001471 GO:0003700|GO:0006355
Bva02g00419 490 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Bva02g00419 490 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Bva02g00419 490 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 330 - -
Bva02g00419 490 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 330 - -
Bva02g00419 490 MobiDBLite consensus disorder prediction 1 23 - -
Bva02g00419 490 SMART rav1_2 73 143 IPR001471 GO:0003700|GO:0006355
Bva02g00419 490 MobiDBLite consensus disorder prediction 38 69 - -
Bva02g00419 490 MobiDBLite consensus disorder prediction 147 171 - -
Bva02g00419 490 ProSiteProfiles AP2/ERF domain profile. 73 137 IPR001471 GO:0003700|GO:0006355
Bva02g00419 490 SUPERFAMILY DNA-binding domain 73 138 IPR016177 GO:0003677
Bva02g00419 490 CDD AP2 72 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00419 Bva-Chr2 5833170 5834978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00419 13 170 AP2-EREBP Transcription Factor Family AT2G40340 49.697 3.21e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva02g00419 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00419 - - aprc:113861479 435.647