Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00396 ATGACAGAGCTTAAGCATCTAGAGAACATATCGTTGTTTGACAACCAATTCTCTGGAGTTATACCTCAAAGCTTGGGAATTAATAGTAGTCTAGTGCGGCTAGACTTGATGAATAATAAGTTCACCGGCATCCTCCCACCACATCTTTGTTTTGGAAAGCAATTACACGTACTGAATATGGGTTTTAATCAACTTCAGGGTGCTATTCCTGCTGATGCGGGAACGTGTCCAAGTCTTAAGAGGTTGACTCTCAACCAAAACAACTTCATAGGACCTCTTCCTCTCTTTCAAAATAATCCCAGTCTCCAATACATGGACTTGAGCAACAATAATATCAGTGGAGAAATTCCATCAAGCTTAGGGAAGTGCACAAATGTCACCGATGTAAATTTGTCAATGAACAAATTTACAGGGCTCATACCTCAAGAGCTTGGTAAGCTGGTGAATGTTAGAATTTTGAATCTTGCTCATAATAATTTGGTAGGTCCTTTGCCATCTCAGCTATCAAATTGTAACAAAATGGACAGTTTTGATGTGGGTTTTAATTTCCTAAATGGTTCATTTCCATCAAGTTTGAAGAGCTGGACAGGAATAACcacattaattttaagagaGAATCATTTCACGGGAAGCATCCCACCTTTCTTGTCCGAATTTGGCATGCTTTTGGAGCTACAACTTGGTGGAAATTTGTTTGGAGGCAAAATACCTGAATCAATTGGAAATTTGCAGAATTTGATGTATGGGTTAAACCTGAGTTCTAATGGGTTAATAGGTGAGGTTCCCTTATCATTTTCTAGCCTTGACAAGCTGGTAAATCTGGATCTCTCTCACAACAATTTGACAGGAGATGTTAGATTCGTTGCTAAGCTCCCTTCATTAGTCATGGTCAATATTTcatacaatttcttttatggtcCTGTACCAAAAATTCTACTGAATTCTGCTCCAATTTCATCCTTGGGCAATCCTGGCCTATTATTTTGCTGTCCTGGCTCAGCATGTACTAGTGAAACTAGTTATATGAAGCCATGTAGTGATAAATCAACCGACCACAAAGGCACCAAAAGAATAGTCCTTATTGTGATGATAGGATTTGCATCCCTAATATTTGTTGCTCTTCTGCTAGCAAGACTGGTTAAAATCTCTGTTGGTGATGCCCAAGAAAACGAGATCCATGATGATGCTGGAGTTTCTCTTATGAAGGAAGTGATGGAGGCCACAGAAAACCTAGATGATAGGTACATAATTGGCAGGGGAGCCCATGGAGTCGTGTATAAAGCCTCACTTGATCCATACAGAGTTTTTGCTGTAAAGAAGGTCCAATATGGGGAGAACAAAGGGAAGCTCCTAAGCATGAGAAGGGAGATTCAAACTATAGGGCTGATTAGGCATAGGAATCTGATTAGATTCCAAAACTCTTGGTCTGGAAAAGACTATGGCCTAGTATTCTATGAGTACATGGAAAATGGAAGCCTACATGATGTTTTGCATGTTAAGAAGCCAGCACCAGCATTAGAGTGGAATGTCAGGTATAAGATAGCTGTTTG 1550 0.3903 MTELKHLENISLFDNQFSGVIPQSLGINSSLVRLDLMNNKFTGILPPHLCFGKQLHVLNMGFNQLQGAIPADAGTCPSLKRLTLNQNNFIGPLPLFQNNPSLQYMDLSNNNISGEIPSSLGKCTNVTDVNLSMNKFTGLIPQELGKLVNVRILNLAHNNLVGPLPSQLSNCNKMDSFDVGFNFLNGSFPSSLKSWTGITTLILRENHFTGSIPPFLSEFGMLLELQLGGNLFGGKIPESIGNLQNLMYGLNLSSNGLIGEVPLSFSSLDKLVNLDLSHNNLTGDVRFVAKLPSLVMVNISYNFFYGPVPKILLNSAPISSLGNPGLLFCCPGSACTSETSYMKPCSDKSTDHKGTKRIVLIVMIGFASLIFVALLLARLVKISVGDAQENEIHDDAGVSLMKEVMEATENLDDRYIIGRGAHGVVYKASLDPYRVFAVKKVQYGENKGKLLSMRREIQTIGLIRHRNLIRFQNSWSGKDYGLVFYEYMENGSLHDVLHVKKPAPALEWNVRYKIAV 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00396 516 PRINTS Leucine-rich repeat signature 102 115 - -
Bva02g00396 516 PRINTS Leucine-rich repeat signature 268 281 - -
Bva02g00396 516 Gene3D Transferase(Phosphotransferase) domain 1 395 516 - -
Bva02g00396 516 ProSiteProfiles Protein kinase domain profile. 411 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g00396 516 Gene3D Ribonuclease Inhibitor 194 335 IPR032675 -
Bva02g00396 516 Gene3D Ribonuclease Inhibitor 97 193 IPR032675 -
Bva02g00396 516 Gene3D Ribonuclease Inhibitor 1 96 IPR032675 -
Bva02g00396 516 Pfam Protein kinase domain 416 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g00396 516 SUPERFAMILY Protein kinase-like (PK-like) 402 515 IPR011009 -
Bva02g00396 516 PANTHER OS08G0446200 PROTEIN 1 516 - -
Bva02g00396 516 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 516 - -
Bva02g00396 516 Pfam Leucine rich repeat 100 160 IPR001611 GO:0005515
Bva02g00396 516 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Bva02g00396 516 SUPERFAMILY L domain-like 4 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00396 Bva-Chr2 5646431 5649081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00396 1 516 Receptor kinase-like Gene Family AT1G17750 47.025 3.95e-143 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva02g00396 Pkinase 1.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00396 - - ccaj:109807212 635.95