LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva02g00392	ATGACAGAGCTTAAGCATCTAGAGAACATATCATTGTTTGACAACCAATTTTCTGGAGTTATACCTCAAAGCTTGGGAATTAATAGTAGTCTTGTGCGGTTAGACTTGATGAATAATAAGTTCACCGGCATCCTCCCACCACATCTTTGTTTTGGAAAGCAATTACACGTACTGAATATGGGTTTTAATCAACTTCAGGGTGCTATTCCTGCTGATGTGGGAACGTGTACAAGTCTTAGGAGGTTGACTCTCAACCAAAACAACTTCATAGGACCTCTTCCTCTCTTTCAAAATAATCCCAGTCTCCAATACATAGACTTGAGCGACAATAATATCAGTGGAGAAATTCCATCAAGCTTAGGGAAGTGCACAAATGTCACTGATGTAAATTTGTCAATGAACAAATTTACAGGGCTCATACCCCAAGAGCTAGGTAAGCTGGTAAATGTTAGAATTTTGAATCTTGCTCATAATAATTTGGTAGGTCCTTTGCCATCTCAGCTATCAAATTGTAACAAAATGGACCGTTTTGATGTGGGTTTTAATTTCCTAAATGGTTCATTTCCATCAAGTTTGAAGAGCTGGACAGGAATAAGcacattaattttaagagaGAATCATTTTACCGGAGGCATCCCAGCTTTCTTGTCCGAATTTGGCATGCTTTTGGAGCTACAACTTGGTGGAAATTTGTTTGGAGACAAAATACCTGAATCAATTGGAAATTTGCAGAATTTGATGTATGGGTTAAACCTGAGTTCTAATGGGTTGATAGGTGAGGTTCCCTTATCATTTTCTAGCCTTGACAAGCTGCAAATTCTGGATCTCTCTCACAACAATTTGACGGGAAGTGTTAGATCCCTTGGTGCGCTCTCTTCATTAGTTGTGGTCAATATTTcatacaatttcttttatggtcCTGTACCAAAAATTCTACTGAATTCTGCTCCAATTTCATCCTTGGGCAATCCTGGCCTATTATTTTGCTGTCCTGGCTCAGCATGTACTAGTGAAACTAGTTATATGAAGCCATGTAGTGATAAATCAACCGATCACAAAGGCACCAAAAGAATTGTCCATATTGTGATGATAGAATTTGCATCCCTAATATTTGTTGCTCTTTTGCTAGTGAGACTggttaatttctttgttgatgATGCCCAAGAAGACGAGATCCATGATGATGCTGGAGTTTCACTTATGAAGAAAGTGATGGAGGCCACAGAAAACCTACATGATAAGTACATAATTGGCAGGGGAGCCCATGGAGTCGTGTATAAAGCCTCACTTGATCCATACAGAGTTTTTGCTGTAAAGAAGGTCCAATATGGGGAGAACAAAGGGAAGCTCCTAAGCATGAGAAGGGAGATTCAAACTATTGGGCTGATTAGGCATAGGAATCTGATTAGATTTCAAAACTTCTGGTCTGGAAAAAACTATGGCCTAGTATTCTATGAGTACATGGAAAATGGAAGCCTACATGATGTTTTGCATGTTAAGAAGCCAGCACCAGCATTAGAGTGGAATGTCAGGTATAAGATAGCTGTTGGAATCGCACATGcattaaaatatcttcattATGACTGTGATCCTCCCATAGTGCACCGAGACGTCAAACCAAAGAATATACTTCTTGACTCTAACATGGAGCCTCATGTTTCTGATTTTGGTATTGCCATGCATATTGCTCAATCTTCTGCTCCAATGCGTACACTTCGCTCAACATATATTGCTGGCACAGTTGGCTATATGGCACCGGAAAATGCATATACAATAGTGCAGAGTGGGAAGTCCGATGTATATAGTTATGGAGTGGTTTTGCTTGAGTTAATAACAAGGAAGATGGTATTAGATCCCTCATTTAATGATCAAACCACACTGATGGGTTGGGTTAGATCTGCCTGGGAAGAAACACCACGTATTGAAAAGATTGTTGATCCAAGCCTTGTAAGTGAGTTATCTGATTCAACTGTAAGGAGGCAAGTTACACAAGTGGTTAACATTGCTTTTAGATGTATTCAGAGAAATCCCAATGTGAGGCCCTCAACGGTAGATATTATCAGACAAATTTG	2072	0.3842	MTELKHLENISLFDNQFSGVIPQSLGINSSLVRLDLMNNKFTGILPPHLCFGKQLHVLNMGFNQLQGAIPADVGTCTSLRRLTLNQNNFIGPLPLFQNNPSLQYIDLSDNNISGEIPSSLGKCTNVTDVNLSMNKFTGLIPQELGKLVNVRILNLAHNNLVGPLPSQLSNCNKMDRFDVGFNFLNGSFPSSLKSWTGISTLILRENHFTGGIPAFLSEFGMLLELQLGGNLFGDKIPESIGNLQNLMYGLNLSSNGLIGEVPLSFSSLDKLQILDLSHNNLTGSVRSLGALSSLVVVNISYNFFYGPVPKILLNSAPISSLGNPGLLFCCPGSACTSETSYMKPCSDKSTDHKGTKRIVHIVMIEFASLIFVALLLVRLVNFFVDDAQEDEIHDDAGVSLMKKVMEATENLHDKYIIGRGAHGVVYKASLDPYRVFAVKKVQYGENKGKLLSMRREIQTIGLIRHRNLIRFQNFWSGKNYGLVFYEYMENGSLHDVLHVKKPAPALEWNVRYKIAVGIAHALKYLHYDCDPPIVHRDVKPKNILLDSNMEPHVSDFGIAMHIAQSSAPMRTLRSTYIAGTVGYMAPENAYTIVQSGKSDVYSYGVVLLELITRKMVLDPSFNDQTTLMGWVRSAWEETPRIEKIVDPSLVSELSDSTVRRQVTQVVNIAFRCIQRNPNVRPSTVDIIRQI	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva02g00392	690	PRINTS	Leucine-rich repeat signature	102	115	-	-
	Bva02g00392	690	PRINTS	Leucine-rich repeat signature	268	281	-	-
	Bva02g00392	690	Gene3D	Transferase(Phosphotransferase) domain 1	488	690	-	-
	Bva02g00392	690	SUPERFAMILY	Protein kinase-like (PK-like)	400	688	IPR011009	-
	Bva02g00392	690	ProSiteProfiles	Leucine-rich repeat profile.	270	292	IPR001611	GO:0005515
	Bva02g00392	690	Pfam	Leucine rich repeat	100	160	IPR001611	GO:0005515
	Bva02g00392	690	Pfam	Protein kinase domain	412	688	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva02g00392	690	Gene3D	Phosphorylase Kinase; domain 1	384	487	-	-
	Bva02g00392	690	Pfam	Leucine Rich repeat	270	283	IPR001611	GO:0005515
	Bva02g00392	690	ProSitePatterns	Protein kinases ATP-binding region signature.	417	440	IPR017441	GO:0005524
	Bva02g00392	690	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	1	689	-	-
	Bva02g00392	690	Gene3D	Ribonuclease Inhibitor	194	335	IPR032675	-
	Bva02g00392	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	533	545	IPR008271	GO:0004672\|GO:0006468
	Bva02g00392	690	Gene3D	Ribonuclease Inhibitor	1	193	IPR032675	-
	Bva02g00392	690	PANTHER	OS08G0446200 PROTEIN	1	689	-	-
	Bva02g00392	690	SUPERFAMILY	L domain-like	4	320	-	-
	Bva02g00392	690	SMART	serkin_6	411	690	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva02g00392	690	ProSiteProfiles	Protein kinase domain profile.	411	690	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva02g00392	Bva-Chr2	5635166	5638837	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva02g00392	1	688	Receptor kinase-like Gene Family	AT1G73080	47.801	0.0	640

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Bva02g00392		Pkinase	7.6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva02g00392	-		-	gmx:100778035	835.869