Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00387 ATGATGCAGCCTGAGATTCTTCAAGATTCAGGGTCAATCTATGAAGAATTGAGCTCATTTTTTGATCAAATTGAGAGCtttagcttcaatgttgatacCCAAATGAGTGATTGTGATTTCAATTCTCTTTACAGAACATCAGAGGAAACTTTTGAAGTTTCCACCATCCCCTCTTCTTCTATCATGTTCTCCAATGACTTTGCCGAATATGAATTTGACAATAACTGTTCTCAGCAACTCCCATCACTAATGGAGGATTTTTCCATGGATTTGGGTAATATCTTTGATTCAATCTTCAGTGCCCAGATTGTGGGAATTCATGGATTCCCAAAGGAAAATGAGGGAAGCTTTGATAATTCCCAACATGTCGCTTCTGAGATTCAGGATTCCTGGAGTCCAACCCCATCCATGATGTCAGACTCGTCTGCAGTACAATCACCAATGACCTTGCCACATGAAGACATGGAAATTGACAACCAATTTGCAATTCCACATCTATTGGAGGCCCTTGAAGAAGCCATGGAACAGGGACATAACCCGCTAGCAGAAGAAATTTTGAGACGCATTAACCAGAAAGTTAGCCCTCTTGGAAATATTCTCGAGCGTGTTGCATTCAACTTGTCTCAAGACATAACTTTCAGTTCTCAGGAAGATTATCTCAGAAGGGAGACCTACAAGAACTTGGAGCCATCATTTCAAACATTCTACAAATGGTTCCCATATGGTAAAGTTGCTCACTTTGCAGCAAATTCAAGAATCCTTGAATCTATTCCAGTGGATTCAAATGAAATACACATAGTGGACTTTGACATGGGAGAAGGGATCCAATGGGCTTCCCTGATCGAGGCCATTGCACAACAGCAGAGAACACTGAAGCTTACTTCAATCAAATGGGAAGATGAGAGCCCTGAGTGTGTTTTCACTCCTTGGAATTTCGAGGACACGAAAAAGCAGCTCTCAGCACATGCCAAATCCTGTGGTCTAAAGCTAAAGGTGGAGGAAAAGGGAATTGAGGATTTGGTTATAGAGCTGAAAAAGATGAACAAAAGGGGAGGAAGTGGAAAGAGGGAATGGTTAGCCTTTAATTGCATGGTGGGTCTTCCTCATATGGGGAGGCCAAGGAGTAGAAGGCATGCCATGGAGTTCCTAAGGGCAGCTAAAGATTTGATTTGCAGCTATGGAAACAAAGGTATTATCACTTTTGGTGATGGAGATGTCTGTGAGAAACTCAAGAATTGCATGAATTTCAGGTCATTCTTTCAAGGCAATTTAGAGCATTACCAAGCTTTGTTAGAGTCAATTGAAGCAAATTTCCCAAAGAAACACTCAGAAGCAAGAATTGCCATggaatctctctttgtgggacCTTATGTGTCTCCTCTTGCTTGGTTGCAGAAATGGGTGGAAGTAAGGAAAAATAGCCATCTACAAGGAGAGATTGGGTTAAAGGGTAGCAGATTTAGCAAAGAGATTGTTATGGAAATTTGTGAAATGCTGAAAGGAAGTGAATGTTCATACCAGGCAAGACTTGAAGGAGATAATGGTAATGAACTTGTTTTAGGATGGAACGGGACACAATTACTGAGAATTTCAACATGGGGAATTTA 1607 0.4001 MMQPEILQDSGSIYEELSSFFDQIESFSFNVDTQMSDCDFNSLYRTSEETFEVSTIPSSSIMFSNDFAEYEFDNNCSQQLPSLMEDFSMDLGNIFDSIFSAQIVGIHGFPKENEGSFDNSQHVASEIQDSWSPTPSMMSDSSAVQSPMTLPHEDMEIDNQFAIPHLLEALEEAMEQGHNPLAEEILRRINQKVSPLGNILERVAFNLSQDITFSSQEDYLRRETYKNLEPSFQTFYKWFPYGKVAHFAANSRILESIPVDSNEIHIVDFDMGEGIQWASLIEAIAQQQRTLKLTSIKWEDESPECVFTPWNFEDTKKQLSAHAKSCGLKLKVEEKGIEDLVIELKKMNKRGGSGKREWLAFNCMVGLPHMGRPRSRRHAMEFLRAAKDLICSYGNKGIITFGDGDVCEKLKNCMNFRSFFQGNLEHYQALLESIEANFPKKHSEARIAMESLFVGPYVSPLAWLQKWVEVRKNSHLQGEIGLKGSRFSKEIVMEICEMLKGSECSYQARLEGDNGNELVLGWNGTQLLRISTWGI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00387 535 Pfam GRAS domain family 165 533 IPR005202 -
Bva02g00387 535 Coils Coil 535 535 - -
Bva02g00387 535 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 534 IPR005202 -
Bva02g00387 535 Coils Coil 330 350 - -
Bva02g00387 535 ProSiteProfiles GRAS family profile. 154 534 IPR005202 -
Bva02g00387 535 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 18 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00387 Bva-Chr2 5540196 5541803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00387 140 533 GRAS Transcription Factor Family AT5G66770 28.230 6.85e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva02g00387 GRAS 2.4e-42 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00387 - - gmx:100784347 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00387 02 5540196 5541803 Bva02g00387 02 5540196 5541803 ECH