Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00358 ATGAGGACCCGGTTCGGGATATGGTTCATCTTCTTGGCATTGCTATATTGTTTTGCAGACTTAGAAGCCAAAACTCTCGACCCCTACAAGGTTCTCGGGGTTGATAAAAATGCAAGTCAACGGGAAATTCAGAAGGCTTTCCACAAGCTCTCCCTCCAGTATCACCCtgacaagaacaaaaataaggGTGCACAAGAGAAGTTTGCTCAGATTAATAACGCATACGAGATTTTATCTGATGAACAGAAGAGGAAGAATTATGATATGTATGGAGATGAAAAGGGAGATCCTGGATTTCAAGGTGGTCATCCTGGGGGTCAGGGTGGATATACTTATTTCACAGGTGGTGGACCTGGACAAAGTGAGTTCAACTTTAGACCAGGGGATTGGCAAAGTACGGGTGGCAGGGGAGGCTCTCATTCATACTCCTTTTCCTTTGGTGGTTCTGGTCGTCCAAACTCGTTTGGGTTTGGTTTGGATGATCTATTTGGCAATTTTTTcggtggtggtggaggaggAGGATTTGGTGGGAGTCATTTTGGTGGTTTTGGTAGTTCAACTAGTTCTCAATCTGGGTCGAGGAGATCCCCGAAAAATTTTAGAGCCATTaattcacaaatttttaagaaagaaatagttgATCAAGGAATGTCCTGGCTTTTGTTATCTTACACTCCCTCACTGAACGACCAGCATTTGGAATCTATTGTGGATGAGGTTGCTGGTTCATTGGATGGAGCTTTAAAGGTTGGAAGCGTTAATTGTGAAAAGGAAGTTTCATTGTGTAAGGAGCTAGGCATATATCCACGCCGAATTCCAAGGGTTTTTGTTTATTCTTACAAGGGGAATGAAAAGGGTTCATTGGTGGAGTACAATGGTGACTTGGCTGCTAAGAATTTGAAGTCTTTCTGTCAAGACCACTTACCGAGGTTCTCAAAACGGACTGACCTGAACTATGTTGAACAGCTTAGCAATGATGAAAAGCTGCCCAGGGTATTGCTTCTCTCCAGCAAGAAAGACACTCCTGTAATATGGCGTGTTCTCAGTGGCTTGTATTACAAACGCATTACTTTTAGTGATGCAGAGGTTCGTGATGTTTCTGATCCAAGAGTGAAAAGGCTAGGAGTTGATGCACTCCCAGCCATAGTGGGTTGGCTACCTAACGGAGACAAGCATGTACTGAAAACGGGGATTTCTGTGAAAGACATAAAATCTGCAGTTCTTGATCTTAGTACTGTActtgataattttatcaaaagaagcaagaaggcagcagctcAGGCCAAAGAGCAAAGTGATTCAGATGAGAAACAGATAAAGTTACTTTCTCGGTCAAACTTTGAGGTTCTTTGTGGCGAGGGAACCCCTGTCTGTTTAATTGGTGTCTTCAGATCTTCTAAAGCCAGAGAAAAGCTAGACTCAGTCCTGTCTTTGGTCTCTCACAAATCACTATCAAGGCGACCAAATCAGGCATCTGGCTCTAGGGACTCCGTTTCCTATGCCCTCTTAGATGCTACAAAGCATGAGtcatttttaaaagcatttgATAAAACAGGATTCAGATCATCAGATAAGCTCTTAATTGCTTATAAACCTCGGAGACGGAAGTTTGCTGCATTTCAAGGGGAAATAACAACAGAAGAAGTAGAGAATTTTATCAGTTCTGTTCTAAATGGAGATATACCTTTCAGGGAAACACTAGACAAACCAGCACTCAAATA 1721 0.3974 MRTRFGIWFIFLALLYCFADLEAKTLDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKNKGAQEKFAQINNAYEILSDEQKRKNYDMYGDEKGDPGFQGGHPGGQGGYTYFTGGGPGQSEFNFRPGDWQSTGGRGGSHSYSFSFGGSGRPNSFGFGLDDLFGNFFGGGGGGGFGGSHFGGFGSSTSSQSGSRRSPKNFRAINSQIFKKEIVDQGMSWLLLSYTPSLNDQHLESIVDEVAGSLDGALKVGSVNCEKEVSLCKELGIYPRRIPRVFVYSYKGNEKGSLVEYNGDLAAKNLKSFCQDHLPRFSKRTDLNYVEQLSNDEKLPRVLLLSSKKDTPVIWRVLSGLYYKRITFSDAEVRDVSDPRVKRLGVDALPAIVGWLPNGDKHVLKTGISVKDIKSAVLDLSTVLDNFIKRSKKAAAQAKEQSDSDEKQIKLLSRSNFEVLCGEGTPVCLIGVFRSSKAREKLDSVLSLVSHKSLSRRPNQASGSRDSVSYALLDATKHESFLKAFDKTGFRSSDKLLIAYKPRRRKFAAFQGEITTEEVENFISSVLNGDIPFRETLDKPALK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00358 573 Coils Coil 61 81 - -
Bva02g00358 573 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Bva02g00358 573 MobiDBLite consensus disorder prediction 87 110 - -
Bva02g00358 573 SMART dnaj_3 26 83 IPR001623 -
Bva02g00358 573 Gene3D Glutaredoxin 200 309 - -
Bva02g00358 573 PANTHER DNAJ PROTEIN ERDJ3A 8 572 - -
Bva02g00358 573 SUPERFAMILY Thioredoxin-like 201 309 IPR036249 -
Bva02g00358 573 CDD DnaJ 27 80 IPR001623 -
Bva02g00358 573 ProSiteProfiles dnaJ domain profile. 27 91 IPR001623 -
Bva02g00358 573 SUPERFAMILY Chaperone J-domain 24 117 IPR036869 -
Bva02g00358 573 Coils Coil 418 438 - -
Bva02g00358 573 Gene3D Glutaredoxin 439 563 - -
Bva02g00358 573 PANTHER DNAJ PROTEIN ERDJ3A 8 572 - -
Bva02g00358 573 Pfam DnaJ domain 27 88 IPR001623 -
Bva02g00358 573 Gene3D DnaJ domain 24 179 IPR036869 -
Bva02g00358 573 PRINTS DnaJ domain signature 47 62 IPR001623 -
Bva02g00358 573 PRINTS DnaJ domain signature 29 47 IPR001623 -
Bva02g00358 573 PRINTS DnaJ domain signature 63 83 IPR001623 -
Bva02g00358 573 PRINTS DnaJ domain signature 83 102 IPR001623 -
Bva02g00358 573 SUPERFAMILY Thioredoxin-like 439 562 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00358 Bva-Chr2 5265332 5268998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00358 29 90 C2H2 Transcription Factor Family AT1G74250 41.176 2.05e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00358 - - gmx:100796871 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00358 02 5265332 5268998 Bva02g00358 02 5265332 5268998 ECH