Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00236 ATGGAGGGGAAGGAAGAAGATGTGAGAGTAGGAGCCAACAGGTACAGAGAGAGGCAACCAATAGGAACAGCAGCACAGACCCAAGATGACAGAGACTACAAAGAGCCACCACCAACTCCATTGTTTGAGCCGGGAGAGCTGTCATCATGGTCATTCTACAGAGCTGGCATTGCAGAGTTTGTGGCCACATTCTTGTTTCTTTACATCACTGTTTTATCAGTGATGGGTGTGGCTAAATCTCCTTCCAAGTGTTCTACTGTGGGTGTCCAAGGCATTGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTTTATTGCACTGCTGGCATTTCAGGGGGCCACATTAACCCAGCAGTGACATTTGGGCTGTTCCTGGCTAGGAAAGTGTCACTGACCAGGACACTGTTTTACATAATTATGCAATGCTTGGGAGCTATTTGTGGTGCTGGCGTAGTCAAGGGATTCCAACCACGCCAATATGAGAGGCTTGGTGGTGGCGCCAACACTCTTAGTGCAGGATACTCCAAAGGCAGTGGCCTTGGAGCAGAAATCGTTGGCACTTTTGTCCTTGTTTACACTGTCTTCTCTGCTACTGATGCAAAGAGAAATGCCAGAGATTCCCATGTTCCTATCTTAGCACCGCTGCCTATTGGGTTTGCTGTGTTCTTGGTGCATTTGGCAACAATTCCTATCACAGGGACTGGCATTAACCCAGCGAGAAGTCTAGGTGCGGCCCTCATTTTCAACAAGGACCAAGCTTGGGATGACCATTGGATCTTCTGGGCGGGACCTTTCATTGGGGCAGCACTTGCAGCTTTGTACCATCAGATAGTGATCAGGGCCTTACCCTTCAAGGCTAAATG 863 0.4878 MEGKEEDVRVGANRYRERQPIGTAAQTQDDRDYKEPPPTPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLSVMGVAKSPSKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKVSLTRTLFYIIMQCLGAICGAGVVKGFQPRQYERLGGGANTLSAGYSKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIFNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRALPFKAK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00236 287 Gene3D Glycerol uptake facilitator protein. 39 286 IPR023271 -
Bva02g00236 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Bva02g00236 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Bva02g00236 287 PANTHER AQUAPORIN PIP1-2 1 286 - -
Bva02g00236 287 MobiDBLite consensus disorder prediction 1 38 - -
Bva02g00236 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g00236 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g00236 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g00236 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g00236 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g00236 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g00236 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g00236 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g00236 287 SUPERFAMILY Aquaporin-like 47 280 IPR023271 -
Bva02g00236 287 TIGRFAM MIP: MIP family channel proteins 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00236 Bva-Chr2 3775896 3778402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00236 1 287 Major Intrinsic Protein MIP AT3G61430 85.017 5.58e-180 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00236 K09872 - jre:108995176 543.502