Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00219 ATGAACAGGGGAATTGAAGTTCTCTCTCCAGCTTCCTATCTCCATAATTCTAATTGGCTATTCCAGGAAACCAAGGGAGCCAAATGGACTCAGGAGGAGAATAAAAGGTTCGAGAATGCTCTTGCTTTGTTTGACAAGGATACCCCAGATCGTTGGGAGAGAGTAGCAGCCATGCTTCCTGGAAAAACTGTAGGTGATGTGATGAAACAGTACAGAGAGCTTGAAGAAGATGTCAGTGTAATTGAGGCAGGCATGATCCCAGTTCCTGGGTACCAAAGTAGTTCTTTCACATTGGAGTGGGTGAATAATCAAGGCTATGATGGCTTCAAGCAATTTTGTACAGTTGGTTGTAAAAGGGGAGCTTTCACTAGGCCATCTGAtcaggaaaggaagaaaggagTGCCATGGACAGAAGAGGAGCACAGGCAATTTCTGATGGGTCTCAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTCGTAATTTCGTCACCACAAGGACACCAACTCAGGTTGCCAGTCATGCTCAGAAATATTTCATTAGACAACTTACAGGAGGGAAAGATAAAAGGAGATCCAGTATCCATGATATCACAATGGTCAATCTCCCGGACACGAAATCTCCTTCTTTAGACAGTAACGGACCGGCTTCTCCAGACCTCGGAGTCATGGTTGTGAATCCACAGCAAAATCAGAAATTTTCTGCCATGGTTAAGCAGGAAAATGACTGGAAATTCCCATATGAGGGTGTGCCAATGTTTACCAATTCTACAAATGGAAACATGGTAATGGCACCATTTCGTGGGATTTCTTCATTTGGATCCAAAGCACAGGATCAATTTCTACTCAGAGGGGCTCTCCATGGACATCAATTTGGAACTTATGATTCCATTTTTCAAATGCAGCCGATGCATCATCAATG 923 0.4258 MNRGIEVLSPASYLHNSNWLFQETKGAKWTQEENKRFENALALFDKDTPDRWERVAAMLPGKTVGDVMKQYRELEEDVSVIEAGMIPVPGYQSSSFTLEWVNNQGYDGFKQFCTVGCKRGAFTRPSDQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLPDTKSPSLDSNGPASPDLGVMVVNPQQNQKFSAMVKQENDWKFPYEGVPMFTNSTNGNMVMAPFRGISSFGSKAQDQFLLRGALHGHQFGTYDSIFQMQPMHHQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00219 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 6 295 - -
Bva02g00219 307 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Bva02g00219 307 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Bva02g00219 307 SUPERFAMILY Homeodomain-like 130 183 IPR009057 -
Bva02g00219 307 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Bva02g00219 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Bva02g00219 307 CDD SANT 28 74 IPR001005 -
Bva02g00219 307 Gene3D - 21 88 - -
Bva02g00219 307 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Bva02g00219 307 Gene3D - 134 184 - -
Bva02g00219 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Bva02g00219 307 CDD SANT 135 180 IPR001005 -
Bva02g00219 307 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Bva02g00219 307 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Bva02g00219 307 SMART sant 25 77 IPR001005 -
Bva02g00219 307 SMART sant 132 182 IPR001005 -
Bva02g00219 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 295 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00219 Bva-Chr2 3477289 3479733 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva02g00219 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00219 - - zju:107407869 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00219 02 3477289 3479733 Bva12g01660 12 14061856 14064031 ECH
Bva02g00219 02 3477289 3479733 Bva02g00219 02 3477289 3479733 ECH
Bva02g00219 02 3477289 3479733 Bva12g00207 12 3644460 3646483 ECH