Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00139 atgtgttttaGAGGAAGAGACAGAGCTCTTGGAGCTTTCGCCACCGCCGCCTTTGGTAAGAGGGAGGCGATGGTAAACTTTGTGAGTGTTGCAAGCAGGAATAGTCGCCGGGGGCAGCTAAACGGTGGTGCTTCTGGTTCTGGGAACGGAAATGGAggcagaagagaaaaaagggaaTCTGGGCCAGAACCTTTGTCATCTTCAACGGTCAGAAAGAGGACCAGAAGCAGATCAGGTGCAGAAAATGGGGGTTCCAGTTCAATGAGTAAGAGAACAAAAGTAAGGAGattggaagatgatgatgtaCCAGAACTTAACAAGGGGAAAATGGTTTTAGAAGACAATGTTGATGATTCGGATTCGATAGAGGTGATAGAAATTGAAGAGGAAGTTTCTGATAATGGCAATGGAAAGGAAATGGAGTACATGAAAACTGATAAGGAAGTAGAAGTTATTGATCTTGATAGTGGTGAGGATGAGATGGAGGCTGATCCAGTTGACAAGAATTGGGGCTTTGATGAGTCTAATCCAATTGTACTCACTGAAAGTAGTGAAGATTCAGATTCAGGTTCAGAAGCTAATGCTAATTCCGAAAATGAATGTGCTGCCGTCAACTACAGTGTGCAGTCAACTGTTAATCCTCCAAACCGTATAAATTTGCTTACAGCACATCCGGGTTCGGCTGATTCTGATgttctttttacattttctgaAAGTGAGGGTGACAACAGTAGTGATGAGGACTTTAGGGTGGATGAGAGCAACGAGGAAAATGATGTAGATGAAGATTCTATGTGTAAAAGTAAAAGGGCAGATggcaagaggaagaagaaaagcagCCAGGCTCACTCCAACAAGTTTGAATATTGTCATGATAACGATTACTTGGGGGAGACCATGCCCACTTTGGAGACTGAAAGCAGTGGGATTTGCCGAAATAATGACAATAATACTGCTGCATTGTCCGGTGAACAGCAAATCCAGAATGCTTTCAAGGATACAGGAATTTCTGCTGTGAAGTCTGGTGTAGCCTGCTCTACCAATCTAccagaagaggaagaagaaaacaaagcagAAGAGGATTCTGAAAACAATGATCAATGTGTTGGGCAATGTAATGAGAAAGTCCAATATGTTTGCAAGGATGTGACACATTCTAGTGTAACCTGTGACAAGCTGCAGATGAATGTAGGTTCTTCAACCAAGAATTCTGAAAAGGAAGCAAAGAGGGCAAAAGAGAAGCAGAAGGCAAAGGCAGCCACAGCAGAAAGATTAAATGGAGACGATCTCAATGTTGGAATGTCAAAGAACCAGAAAGAAATGGGACCTTCAACAAAATTCTTTAAGACTGTTGAAGAcagaaataaaggaaaggaagtgCAGGAGACTACTAAGAATGATGGAAAAAggtataaaaaagaaaagaggctTGTAGCCAAGGAGAAGCTAGGCTCGTCTAATGACTCAAATCTTGTTGAGCTTCTTGCTGATTGCGTTTTAGGCAAACATAATACTAGTAAAAGTCATCCACTTCAATCTGAAATAGAAGTTAATGTTGATGCTGAGCCACCATCATCTGAAGAGGCCATTCCCTTGAAGTTTACTTTTGGGAATGACGAGCCTAAACCAGTTGAAAAATCTGAGTTTGAGAAGGATTTGGATAGCCTGTGGGAAGAGTACGACATGTTTAGCAaattggacgaaattggtgtccagGTTggcaaggaagagaaaggacTAGAAAGAGGAAGTGAAAGAACCCCAGCTACCCACTGTAGTCATGAGTATGCTCTTGATGATGAGATTGGGATGTGTTGCAGAATTTGTCACCATATTGCCATAGAGATCAGATATATCTCACCATTAGTGgagaaatattattgtttggcCAGATCTGGACAAAGGCGATCGTCTGGTGAAGCGGACATACCATTCTTTGATGGAATTCAGTTTAAAGCTGGCGAGAATAGTTCACAGGCTGTCTTCAATAATAGTGAAGGCACAGTTTGGGACATGATCCCTGGTGTAAAAGAAGATTTGCATCCTCATCAACAGGAAGGTTTTGAGTTTGTTTGGACAAATCTGACTGGAACCACTGAGCTTCACAAGTTGAAGAATGCTGATCCAAATAGCCCAGGTGGCTGTATTATCAATCATGCCCCAGGAACTGGAAAGACACGTCTCACAATTGAGTTTCTCAAGTCCTATTTGGAATTATTTCCTCTCTGTCATCCTGTTATCATTGCTCCTGCCAGTGTACTGCTTACATGGGAAGATGAGTTCAAAAAATGGGATAATGTCATACCTTTCCATAATATGAGCATTCCTGAATTATCAGGAAAAGAACTTGTAGTTGATAGCAGTGGAATGATAGGGTTTAGCTGCCGTAGCTTGAAAAGAAATGACATACGGTTGTTAAAATTGCTTTCATGGTACCAACAGAAAAGTATTCTGGGAATCAGCTATACTTTATATGAAAAGATTGCTGGAGAAAGTACCAATGCAAAGAGAGCAAAACAAAGTGAAGTGATGCGAAAGGTTCTACGTGAAACTCCTAGCTTGTTAGTTCTCGATGAAGGTCACACTCCTCGAAACAAGGGTACTCAAATTTTTAAGGTTCTATCAGAAATTAAAACTGGAAACCGCATCCTACTCTCAGGGACTCCTTTTCAGAATAATTTCCTGGAACTGTACAATATACTGTGCCTTGTGAAACCATCATTTGCTGATGGAATTCCTGAAGATCTGAAGAAATTCTGCCAGAGCAAAAGATTaatccaagaaaagaaaagagttaaaCACATGAGATGGAAAGAAGTTGCAAGTGGAAATTTTAATGGATATTCTAATGATCAAGCAATAGACGAGTTGAAAATGTTGATGGCTCCATTTGTTCATGTTCATGAAAATAGCATACTTCATAAAAGTCTTCCTGGATTGGTAGAATGTGTGGTGATCTTGAATCCTTGTAATAAGCAGAAAGAGATCCTAGAGATCATTAAATCTTCTCAAAGTGCATTTGCATTTGAAAGCAGGCTGGCTTTGCCGTCTATCCATCCATCCCTTTTACTCTACTGTGCCTtatcagaagaagaaaaatctctAGTTGATAGGGATCTGTTGGAACAGGTTAAACCAGATCCATATGAAGGCGCTAAAACAAGATTTCTGGTGGATTTCATCAGGCTGTGTGAGGCAGTTAATGAGAAAGTTATTGTATTCAGCCAGTTTATAGATCCATTAAACCTAATCAAGGACCATCTCCATTCACTTTCAGAGTGGTCTGAAGGTAAGGAAGTATTGCAAATGGATGGCACGCTTGAGCAAAAGCAAAGGCAGTCTTTGATTCATAATTTCAATGATCCAAACAGCAATGCCAAAGTATTACTTGCATCAACAAGAGCATGCTCTGAGGGCATCAATTTAACTGGAGCTTCAAGGGTGATATTGCTTGATGTTGAGTGGAATCCTGCTGTGGAAAGACAAGCTATAAGCCGAGCTTATAGACTAGGCCAAAAGAAAGTAGTCTATACTTATCAACTTATAACAAAGGATACCGAAGAATGGAGCAAGTACCTTAGAATGGCAGAAAAAGAACGGATATCAAAACGGGTTTTCTCGGCTAGCAAAAATGTGAATGACAAGCAGAAGAGTTCTGTAGTAGCTCAAGAGGATAAAGTTTTAGATAACATGGTTCAGCATGAGAAACTCAAGGATATTTTTGACAGTATAATCTACCAGCCAAAGGAGAAGATTCTTGGTCAGAGTTCTTG 3773 0.3785 MCFRGRDRALGAFATAAFGKREAMVNFVSVASRNSRRGQLNGGASGSGNGNGGRREKRESGPEPLSSSTVRKRTRSRSGAENGGSSSMSKRTKVRRLEDDDVPELNKGKMVLEDNVDDSDSIEVIEIEEEVSDNGNGKEMEYMKTDKEVEVIDLDSGEDEMEADPVDKNWGFDESNPIVLTESSEDSDSGSEANANSENECAAVNYSVQSTVNPPNRINLLTAHPGSADSDVLFTFSESEGDNSSDEDFRVDESNEENDVDEDSMCKSKRADGKRKKKSSQAHSNKFEYCHDNDYLGETMPTLETESSGICRNNDNNTAALSGEQQIQNAFKDTGISAVKSGVACSTNLPEEEEENKAEEDSENNDQCVGQCNEKVQYVCKDVTHSSVTCDKLQMNVGSSTKNSEKEAKRAKEKQKAKAATAERLNGDDLNVGMSKNQKEMGPSTKFFKTVEDRNKGKEVQETTKNDGKRYKKEKRLVAKEKLGSSNDSNLVELLADCVLGKHNTSKSHPLQSEIEVNVDAEPPSSEEAIPLKFTFGNDEPKPVEKSEFEKDLDSLWEEYDMFSKLDEIGVQVGKEEKGLERGSERTPATHCSHEYALDDEIGMCCRICHHIAIEIRYISPLVEKYYCLARSGQRRSSGEADIPFFDGIQFKAGENSSQAVFNNSEGTVWDMIPGVKEDLHPHQQEGFEFVWTNLTGTTELHKLKNADPNSPGGCIINHAPGTGKTRLTIEFLKSYLELFPLCHPVIIAPASVLLTWEDEFKKWDNVIPFHNMSIPELSGKELVVDSSGMIGFSCRSLKRNDIRLLKLLSWYQQKSILGISYTLYEKIAGESTNAKRAKQSEVMRKVLRETPSLLVLDEGHTPRNKGTQIFKVLSEIKTGNRILLSGTPFQNNFLELYNILCLVKPSFADGIPEDLKKFCQSKRLIQEKKRVKHMRWKEVASGNFNGYSNDQAIDELKMLMAPFVHVHENSILHKSLPGLVECVVILNPCNKQKEILEIIKSSQSAFAFESRLALPSIHPSLLLYCALSEEEKSLVDRDLLEQVKPDPYEGAKTRFLVDFIRLCEAVNEKVIVFSQFIDPLNLIKDHLHSLSEWSEGKEVLQMDGTLEQKQRQSLIHNFNDPNSNAKVLLASTRACSEGINLTGASRVILLDVEWNPAVERQAISRAYRLGQKKVVYTYQLITKDTEEWSKYLRMAEKERISKRVFSASKNVNDKQKSSVVAQEDKVLDNMVQHEKLKDIFDSIIYQPKEKILGQSS 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00139 1257 Pfam Helicase conserved C-terminal domain 1058 1171 IPR001650 -
Bva02g00139 1257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 68 1252 - -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 155 208 - -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 403 421 - -
Bva02g00139 1257 SMART ultradead3 676 919 IPR014001 -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 176 208 - -
Bva02g00139 1257 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 706 907 IPR014001 -
Bva02g00139 1257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 68 1252 IPR044567 GO:0080188
Bva02g00139 1257 Gene3D - 652 943 IPR038718 -
Bva02g00139 1257 Gene3D - 978 1251 IPR027417 -
Bva02g00139 1257 Coils Coil 403 425 - -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 398 421 - -
Bva02g00139 1257 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1059 1220 IPR001650 -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 347 366 - -
Bva02g00139 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 1211 IPR027417 -
Bva02g00139 1257 Pfam SNF2-related domain 680 998 IPR000330 GO:0005524|GO:0140658
Bva02g00139 1257 MobiDBLite consensus disorder prediction 35 110 - -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 454 473 - -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 91 110 - -
Bva02g00139 1257 SMART helicmild6 1082 1171 IPR001650 -
Bva02g00139 1257 CDD SF2_C_SNF 1052 1182 - -
Bva02g00139 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 672 965 IPR027417 -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 63 90 - -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 241 260 - -
Bva02g00139 1257 MobiDBLite consensus disorder prediction 237 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00139 Bva-Chr2 2604813 2611611 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00139 1069 1201 RAD5 or RAD16-like Gene Family AT5G43530 42.857 5.43e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva02g00139 SNF2_N 5.4e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00139 K10875 - qsu:112002935 831.632