Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00117 ATGGCGTCTCCGCCTCCGTTAACTCTAAACGTCGTCGGATCAGACGCGGTTCCTGATGATATTGCTAGTTCTAGTTCTGGTAGTGGAACGTCGTCGTTTCTAAGCAGGTTGAATCCTAGCATTCTTATTATCGTCACTGTCCTTGCTGTTACTGTGATTGTATCGTTAGCTCTGTGCTTTCTTGTTCGTCACCTCAACCGCCGCTGCCTCCGCCGGCTTTCCCCTTCCTCTGCCACAATTTCTACGACTGCGACGCCTGTTTTCACCTCAAGCCGGCGAATCTCGCCGGAAATCCCTCCGGCTTCTGTAATTGATTCGCTCCCGCTGTTTCCCTATGCTTCTATTAGGCGCCGGTCCTCTGGCTCCTCCGCCGGCGACTGCGCTGTTTGCCTCTCCAAATTCGAGCAAAACGACCTCCTCCGGTTGCTTCCTCTTTGTTGCCATGCCTTCCACGCTGAATGTATTGACACGTGGCTCCAATCGAACCTCACCTGTCCGCTCTGCCGATCGCCCATTTTCACCTCTGAAGCGGACCTCGTGAAGATTCTGCAATCTTCATCAGTCGCCGGCGGCGGAAGCTTCCGGCTCGAGATTGGGAACATCAGTCGCCGTGGAACGGTCTCGGACTCTGCCGGAGAAGTGAGGACAGGGTCGAGGTCGAGGTCGAGGTCCTATTCGATAGGTTCTTTTGAGTATTTTGTAGACGAAGATTCTGAAGTTCCGTTGAGCCACGCGCACCGGAGGAGCATTTCCGATAATAAAGACGACTCGACGGCTCGGGGGTCTCAGCCGGCTCAGCCAGTTAACGAGGACACTTTAGCCTCTGATGTAGCCAATGGAAGGAACTGGCTGAAGGACTATGTTGACAGGCTCTCGGCTTCAATTTCATCCAGAACGACATCGTTTCGGAGCTCTGGAAGATTCTTCACCGGGAGCAGTAGACAAAGCGACGCCGTTGCAGTCACTGCCGACGAATATGACATTGAAGGCCACCGAATTGGGGAGGAGATCAGCGAGATGTTCCGGTGGCTCTCAGGGGTATA 1043 0.5388 MASPPPLTLNVVGSDAVPDDIASSSSGSGTSSFLSRLNPSILIIVTVLAVTVIVSLALCFLVRHLNRRCLRRLSPSSATISTTATPVFTSSRRISPEIPPASVIDSLPLFPYASIRRRSSGSSAGDCAVCLSKFEQNDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSPIFTSEADLVKILQSSSVAGGGSFRLEIGNISRRGTVSDSAGEVRTGSRSRSRSYSIGSFEYFVDEDSEVPLSHAHRRSISDNKDDSTARGSQPAQPVNEDTLASDVANGRNWLKDYVDRLSASISSRTTSFRSSGRFFTGSSRQSDAVAVTADEYDIEGHRIGEEISEMFRWLSGV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00117 347 Pfam Ring finger domain 126 169 IPR001841 -
Bva02g00117 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 319 - -
Bva02g00117 347 CDD RING-H2_PA-TM-RING 126 169 - -
Bva02g00117 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 319 - -
Bva02g00117 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 178 IPR013083 -
Bva02g00117 347 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Bva02g00117 347 SUPERFAMILY RING/U-box 105 175 - -
Bva02g00117 347 MobiDBLite consensus disorder prediction 256 272 - -
Bva02g00117 347 SMART ring_2 127 168 IPR001841 -
Bva02g00117 347 MobiDBLite consensus disorder prediction 244 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00117 Bva-Chr2 2006798 2008192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00117 20 193 Rapid Response to Elicitors AT3G05200 29.944 4.34e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00117 K10663 - gmx:100776516 381.333