Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00098 ATGAGCAGCAGTCATATTAATTCAGTTTTTTATGCCGAATCCTACCATCCCATTCAAGCTGGGAGCATAGATGGCACTGATGTTCTTCCTCATGATAATGCCGTTTATAGAGCTCTCCTCTGTTCCTCTGCGGGCCTCTatGACCCCTTTGGTGATCCTAAGGCCACCGGAGATCCTTATTGCACTGTGTTCGTTGGTTGCCTCTCTCGCATCACCACAGAGGAAACTATTCACAGGgtTATGAGCAAGTATGGCCGGGTGAAGAACTTACGCTTGGTTAGGGACATTGTAACTGGAGCTTCAAGGGGTTATGCATTTGTTGAATATGAAACTGAGAAAGAGATGCGGCGTGCATACAAGGATGCTCATCATTCTGTTATTGATGATTGTGAAATTATAGTTGATTATAACAGACAGCAGTTGATGCCTGGGTGGATCCCTAGAAGGTTAGGTGGTGGTCTTGGTGGTAGGAAGGAGTCAGGGCAACTTCGCTTTGGGGGAAGAGAAAGACCATTTCGAGCTCCCTTGAGGCCAATCCCATATGATGAATTGGAGAGGCTTGGCATCCCACCTCCACCCGAGGGAAGATACATGTCACGCTTTCaggCCCCATCCCCTCCAAGAAGGGAAAGGAATCCTTCGGACAGGGAAGTTGGCTCTTATAGAGGGCACTCTAAGGACAGAATGGAAGATTCCCTCAGAAGTCCAGTAGAGACTGAGGAAAGGCATTACAAAAGGAGTTCAACTCACAGAGAAGATGGCTCGCATAGAAGGAGCTCTTCTGATAGAAAAGGAGAGAAGGATGGCCATTACCGCAGGAGTTCATCTGAGAAGGAACAACGCCGTCGTCGGAGCTCTGTGGAAAGGGGAGAGCACTCTcgtaaaagaaaggaaagagatgAACACTCTCATAAGCAGCACAAGCATAGCCAATATTCCCATCACGAGGACTA 953 0.4659 MSSSHINSVFYAESYHPIQAGSIDGTDVLPHDNAVYRALLCSSAGLYDPFGDPKATGDPYCTVFVGCLSRITTEETIHRVMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEKEMRRAYKDAHHSVIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRERPFRAPLRPIPYDELERLGIPPPPEGRYMSRFQAPSPPRRERNPSDREVGSYRGHSKDRMEDSLRSPVETEERHYKRSSTHREDGSHRRSSSDRKGEKDGHYRRSSSEKEQRRRRSSVERGEHSRKRKERDEHSHKQHKHSQYSHHED 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00098 317 Gene3D - 48 168 IPR012677 -
Bva02g00098 317 SUPERFAMILY RNA-binding domain, RBD 49 168 IPR035979 GO:0003676
Bva02g00098 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 132 IPR000504 GO:0003723
Bva02g00098 317 MobiDBLite consensus disorder prediction 209 317 - -
Bva02g00098 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Bva02g00098 317 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 6 257 - -
Bva02g00098 317 SMART rrm1_1 62 135 IPR000504 GO:0003723
Bva02g00098 317 MobiDBLite consensus disorder prediction 150 317 - -
Bva02g00098 317 CDD RRM_snRNP35 58 147 IPR034146 -
Bva02g00098 317 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN 6 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00098 Bva-Chr2 1720304 1731068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00098 62 134 Eukaryotic Initiation Factors Gene Family AT2G23350 30.137 4.60e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00098 K13155 - gmx:100814109 427.557