Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00031 ATGGCAAAGTCAAACTATTGTGTTTGCCTTATTCCTTTGTTTTCCATCTTAGTTGCTCAGTTTGAGGTAGGGGCTACTGCTCTACTTTTAGGAGGAAAGACATTGAAAATTGGAGTACCCATGAAATCAGATGCGTTTGTGGATGTAAAACTGAATAGTACAAATCAGACAATGCAGAACCAAGTTACTGGGTACTCAATTGACGTTTTCAGTGCTACAGTATCTTATCTTGAAGGGATAGGATTAAATGTTTCTTATGAGTTTGAAGCTTTTGCAAACAGAGAGGGGATAAGTGCTGGCACTTACGACGATCTCCTGCATCAGATTCCTGAAAAGtaTGACGGTGTGGTGGGCGATGTAACTATTGTGGCAAACCGATCGACCTATGTAGATTTTACGTTACCATATACAGAATCAGCTGTGAGGATGCTTACACAAGTCAGACATAGTCGCCACTTAGATATGTGGATCTTTCTGCGGCCATTTAGTTGGGATCTTTGGCTCTCCATCATCTTATTTTGTGTCGTTATAGGATTTGCTCTATTGTTCATGGAACGTAACGCAAACAAGGAAGCAGAAATTGAAGATTCACCAGGGCAAAAACGACTTACTCGACCATCAATTTTATGTCTTCCTCTAGCTCAAGCAGTGCTACCTGAAAgAGAATCGGTAGCCAAGAAATGCTCTAGGTTTGTACTGTTGGTGTGGTTAGGGTTGGCTTTCATTCTCATGCAAAGCTACACGGCAAGTTTGTCCTCAATCTTGACAGTAGATCAAATAACGCCAAGTTACCCCACCGTCGATAATCTGAAAAGAGATCAAGAAAATGTTGGATACCGGGATGGTTCTTTTGTAGGAGATTTCTTAAAAGGTCAGTTACAGTTTGATAAGTCAAGGCTAAAAACCTACTCCACAGATGAAGAATATCGTGATGCATTAAATAAAGGAACTCATCAAGGAGGTGTTGCTGCTGTCTTTGATGAATTACCCTTCATTAAATTCTTCATCAAACGGTATGGTTCCAAGTATATGATGGCTGGACCTACCTATCGAACCgatggttttggttttGCATTCCCACTAGGTTCCAACCTTACGTATTACTTTTCTAGAGCCATATTAAATGTCACTGAAGGTCCAAGGATggatgaaattgaagaaaaatactttgGCATCAATGATGATGATCTCCAAGATCAGTATGACCAAATATCAACAGAAACTCCCAGCCTCTCCGCACAGAGCTTTGCAGGCCTGTTCATTATCACTGGATCCCTTATCTTGTTAGCTTTGCTAGTATCTGAAAGCAGTATTTGGCAACGGCCGGTTATGCTGGCGAACACTTTCAGCAAAAGATATCTATTCTCCTCAAGTTCAAAGAAAGTAATTCCAGCACAGGATGGTTCTACAAATGGAAGGGATGCTGGTTCAACCAATGAACAAAATGGCCATCCACAAAGCCTTCAAAGATCTTCGTTGCCTGTGTA 1487 0.4001 MAKSNYCVCLIPLFSILVAQFEVGATALLLGGKTLKIGVPMKSDAFVDVKLNSTNQTMQNQVTGYSIDVFSATVSYLEGIGLNVSYEFEAFANREGISAGTYDDLLHQIPEKYDGVVGDVTIVANRSTYVDFTLPYTESAVRMLTQVRHSRHLDMWIFLRPFSWDLWLSIILFCVVIGFALLFMERNANKEAEIEDSPGQKRLTRPSILCLPLAQAVLPERESVAKKCSRFVLLVWLGLAFILMQSYTASLSSILTVDQITPSYPTVDNLKRDQENVGYRDGSFVGDFLKGQLQFDKSRLKTYSTDEEYRDALNKGTHQGGVAAVFDELPFIKFFIKRYGSKYMMAGPTYRTDGFGFAFPLGSNLTYYFSRAILNVTEGPRMDEIEEKYFGINDDDLQDQYDQISTETPSLSAQSFAGLFIITGSLILLALLVSESSIWQRPVMLANTFSKRYLFSSSSKKVIPAQDGSTNGRDAGSTNEQNGHPQSLQRSSLPV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00031 495 Pfam Bacterial extracellular solute-binding proteins, family 3 59 391 IPR001638 -
Bva02g00031 495 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 7 470 - -
Bva02g00031 495 MobiDBLite consensus disorder prediction 462 495 - -
Bva02g00031 495 Pfam Ligand-gated ion channel 392 424 IPR001320 GO:0015276|GO:0016020
Bva02g00031 495 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 7 470 - -
Bva02g00031 495 SUPERFAMILY Periplasmic binding protein-like II 8 391 - -
Bva02g00031 495 CDD GluR_Plant 33 390 - -
Bva02g00031 495 Gene3D - 156 286 - -
Bva02g00031 495 Gene3D - 29 155 - -
Bva02g00031 495 SMART GluR_14 34 392 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00031 Bva-Chr2 602797 606403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g00031 31 441 Ion Channels AT5G11210 36.993 1.81e-77 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00031 K05387 - aip:107641909 469.929