Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01956 ATGGCGGGCAAAAGATCAGCTAAGACAAATCCATCACAGGCTCGGAAGAGGGTTGAAGCCGTTGATACCAAGTCTGCTTCTACTCTTGTTCGCGGTAAAGATGGCAGTGCTTTTGCTCGATGTGGTGAATGTAACAAAGATGTTCCGGTGGCACTCATAAGTATGCACAGTTGTAGTCTTGaagctaaaattaaaatgaatctaGATGCTCAGGTAGTTGAAAAGCATACTGAAGTCAAGAAGCCAGAAGAGACaaagaaatcaaaatccaaagaacCTAAGGCCAAAAGAGCTAAGGttgagaaggagaagaagaaggatcCCAATGCACCCAAGCGTCCTGTCACAtcctttttcatctttctGGAAGAGTTTAGAAAAGAGTACAAGGAGGCAAATCCTGATGCAAAGGGTGTTAAAGGGGTTGCTAAAGAGGCTGGTGAGAAGTGGAAATCAATGACTGATGAAGAGAAAAAGGCTTATCATGATAAAGCTGCTGAGCTCAAGGCAGAGTATGAAAAGGCTATGGAAGCTTATAATGCTGAAGATGAAGCACCGAATGTTGATGAGGGGTCTGACAAGGAATCTGAGGAAAAGGAAGTTGCAGAGGATGAGAAGTCTGACAAGGAAGCTGAGGAAAAGGAAGTTGAAGAGGATGAGAAGTCTGACAAGGGAGCTGTTGCAAATGAATTGGAAGAAGTCGCTGATGAGGAATA 716 0.3966 MAGKRSAKTNPSQARKRVEAVDTKSASTLVRGKDGSAFARCGECNKDVPVALISMHSCSLEAKIKMNLDAQVVEKHTEVKKPEETKKSKSKEPKAKRAKVEKEKKKDPNAPKRPVTSFFIFLEEFRKEYKEANPDAKGVKGVAKEAGEKWKSMTDEEKKAYHDKAAELKAEYEKAMEAYNAEDEAPNVDEGSDKESEEKEVAEDEKSDKEAEEKEVEEDEKSDKGAVANELEEVADEE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01956 238 Gene3D High mobility group box domain 94 193 IPR036910 -
Bva01g01956 238 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 206 - -
Bva01g01956 238 Coils Coil 158 185 - -
Bva01g01956 238 CDD HMGB-UBF_HMG-box 111 177 - -
Bva01g01956 238 MobiDBLite consensus disorder prediction 75 113 - -
Bva01g01956 238 MobiDBLite consensus disorder prediction 192 209 - -
Bva01g01956 238 MobiDBLite consensus disorder prediction 175 238 - -
Bva01g01956 238 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 206 - -
Bva01g01956 238 Coils Coil 192 222 - -
Bva01g01956 238 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 111 180 IPR009071 -
Bva01g01956 238 MobiDBLite consensus disorder prediction 75 111 - -
Bva01g01956 238 SMART hmgende2 110 181 IPR009071 -
Bva01g01956 238 MobiDBLite consensus disorder prediction 132 162 - -
Bva01g01956 238 SUPERFAMILY HMG-box 99 180 IPR036910 -
Bva01g01956 238 Pfam HMG (high mobility group) box 111 180 IPR009071 -
Bva01g01956 238 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01956 Bva-Chr1 19658026 19660111 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva01g01956 HMG_box 2.2e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01956 K25507 - zju:107421880 205.297