Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01949 ATGCCTGACAATGTGGATCATATTCATGATTTCATCAACGGAGCTTGGAAACTTTGTTCTCATTTAGGTGGTTGGGTTTCTGGTTTAATATCAAAACCTTATTTAGACGTGGTTGGTTCAGCATTTGATGATTCTCTTTCTAGGTTTGctgaggaaagaaaaagtagttaTTCAGATTTTATGGCTCAGCTGGAGTACATAGATATTAGTTCATCTGATGATGATCTTGAAGAGATAGGAGGTTCTAATTATAGGAGTCTTCCAGAATGGGCTGGTACTGGAAGCAGTGCTGGTTATGGTGGAGGTTCTAAGCCGGGTAGCTCTTTCGAAAGGGCAAATACTTCAAATGCAGGCCCTGCCAGTGTTAATAATTTTCCACAACTCAAGCCCTATACTCAACCTGGGTCTAGCAATTATACGCTGAATCATAGTGTTGCACATGCAGATGATTTTTTGTATGTTAGGGAGAATGGAAATCAGGCAGTCAATTCTCGAATTGCGAATGATTCAGGtggaaattttgagaaaatgtcATCTCAACAAGCTTTAAAGAGGACCCTCCCATCATCTCTTCAGCCATCTGCTCCAAGGACGCATTCATTGTCTCTTCAGTCATTTGCACCAGATTCTAGATTAAGCAACTTGAAAAGTAACACAAGTAGCAATACTTATGGAAATCCTTATTATGTAGGAGGACCTAGTATGACAAATGACAAGGGCTACATGCGTGACCATTATGGCAGGGTTAGAGATGAAGAACGTTTCTTGCTTCAAAATGGTGGGAGTAGGGCCCTTCCTCCTTCTTTGATGCATGGAAAGGCCCCGGCTAATCTGTTAGCCAGTTCAAGTGAATCTGCATTCCGTGCTGGGACAGGTGAAGAGAGGGTTTCTGAAAATGATGAGACGCTGATTTATCAGGCTGCTTTAGAGGATCTCAATCAACCAAAAGTTGAAGCTAATTTACCTGACGGTCTGTTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCATGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGTCTGGGTGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAGTTTCAATGATTGCCCTCATACAAATGCAGAGGTCATTGCAGTCAAAATCTAAAACAGATGATAGTTGCAGTCACAAAGCTGAAGCTTTAAAtttggatgatgatgatgataatggCAGTGTTGATGTGGAAAAATTCAAAGGGGATGAAGAGTCAAATGTTAAAAAGCCTACTCCAGAACCAAGTAGTTCATCACAGGTGCTAAGTAGGAAAAGGCCAGCTGCTGGTACATTGGTTGTCTGCCCTGCCAGTGTTCTTCGTCAGTGGGCCCGGGAGCTTGCTGACAAAGTTGATGACGAAGCTAAGCTTGAAGTGTTGATTTATCATGGAGGCAGCAGGACAAAGAATCCTGTGGAACTTGCTAAATATGACGTGGTTCTTACTACATATTCGATTGTGACTAATGAAGTTCCAAAGCAACCTTTAGTTGAAGAGGATGAAATTGATGAAAGAAATGGGGAAAAATTTGGGTTATCCTCTGAATTTTCTCTTagtaaaaagaggaaaaagacaaataatgCAAATAAGAAGAGTAAAAAGGGTAAAAAGGGAATTGACAGTTCCTCTATGGATTGTGGTTCTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGACGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTTGCTAGAGCTTGCTGCAGCCTTCGGGCCAAAAGAAGATGGTGCCTATCGGGAACACCTATTCAAAATACTATTGATGATCTGTACAGCTACTTCAGGTTCCTGAAGTACGATCCTTATGCAGTATATAAATCCTTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTATCCAGGGTTACAAGAAACTTCAAGCAGTTCTGAGAGCCATAATGCTACGGCGGACAAAAGGAACCATTATTGATGGGGAGCCAATAATTCAGTTACCCCCTAAAACAATCCGGCTGAATAAAGTGGATTTCTCATTTGAGGAGAGGGCATTCTACAAAAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCAGCGGCTGGCACAGTGAATCAGAACTACGCAAATATTCTTCTAATGCTTTTACGTCTTCGTCAGGCTTGTGACCACCCACTTCTTGTTAAGGATTATGATTCCGACCCAGTTGGGAAAAATTCTGTAGAAATGGCGCATAGGCTTCCCAGGGATATGCTGATTAATCTTTTCAATTGTTTGGAAACCACTTTTGCAATATGTCAAGTTTGCAATGATCCGCCTGAAGATGCTGTTGTTACTATGTGTGGTCATGTCTTCTGCTATCAGTGTGTATCAGAATATTTGACAGGTGATGATAACACATGCCCTGCAATTGATTGTAGAGAACAAATTGGTGATGATGTTGTTTTTTCCAAAGCTACTTTAAGAAGTTGCATCTCTGATGACCTTGGTGGTAGTAGTTCAACAAATTCTCTTGTTGACTATTCAGTAGTACAACAAAGTGACTACACTTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCTGTCAAATTGTGAAATAAAGAGTTCAGGTTCTGGACTACCAAGTTCCTCTGAATATAGGAATTCATTGTCTCCTGGTGATTCGGATATTGAAGATTTCTATTCAGATGTAAAACGCACAAGAAAATATTCGGAGTCAACAACTGAAGGATCAATAAAGGCTATTGTTTTCTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGATGTCACTGAACCAGTCCTGCTTACAGTACAGGAGACTTGATGGTACAATGACTCTATCTGCCAGGGACAAATCTGTTAAAGATTTCAATACTGATCCTGAGGTCACTGTTATGCTGATGTCTTTAAAAGCAGGAAACCTTGGTTTGAACATGGTTGCTGCATGCCATGTCATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTACTGTGACGCGTATTACTATAAAAGACACTGTAGAAGATAGAATATTGGCTCTCCAGgaagaaaagagaaaaatggttGCTTCTGCTTTTGGTGAAGACCATGCTGGGGGTACTGCGACTCGGCTTACCGTGGATGATCTGAAATATCTTTTCATGGTCTA 3233 0.3972 MPDNVDHIHDFINGAWKLCSHLGGWVSGLISKPYLDVVGSAFDDSLSRFAEERKSSYSDFMAQLEYIDISSSDDDLEEIGGSNYRSLPEWAGTGSSAGYGGGSKPGSSFERANTSNAGPASVNNFPQLKPYTQPGSSNYTLNHSVAHADDFLYVRENGNQAVNSRIANDSGGNFEKMSSQQALKRTLPSSLQPSAPRTHSLSLQSFAPDSRLSNLKSNTSSNTYGNPYYVGGPSMTNDKGYMRDHYGRVRDEERFLLQNGGSRALPPSLMHGKAPANLLASSSESAFRAGTGEERVSENDETLIYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALIQMQRSLQSKSKTDDSCSHKAEALNLDDDDDNGSVDVEKFKGDEESNVKKPTPEPSSSSQVLSRKRPAAGTLVVCPASVLRQWARELADKVDDEAKLEVLIYHGGSRTKNPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEIDERNGEKFGLSSEFSLSKKRKKTNNANKKSKKGKKGIDSSSMDCGSGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTIIDGEPIIQLPPKTIRLNKVDFSFEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSDPVGKNSVEMAHRLPRDMLINLFNCLETTFAICQVCNDPPEDAVVTMCGHVFCYQCVSEYLTGDDNTCPAIDCREQIGDDVVFSKATLRSCISDDLGGSSSTNSLVDYSVVQQSDYTSSKIKAVLEILLSNCEIKSSGSGLPSSSEYRNSLSPGDSDIEDFYSDVKRTRKYSESTTEGSIKAIVFSQWTSMLDLVEMSLNQSCLQYRRLDGTMTLSARDKSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGGTATRLTVDDLKYLFMV 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01949 1077 SMART ring_2 776 814 IPR001841 -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 163 230 - -
Bva01g01949 1077 Pfam Helicase conserved C-terminal domain 922 1019 IPR001650 -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 532 552 - -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 383 398 - -
Bva01g01949 1077 SUPERFAMILY RING/U-box 774 834 - -
Bva01g01949 1077 SMART helicmild6 936 1019 IPR001650 -
Bva01g01949 1077 ProSiteProfiles Zinc finger RING-type profile. 776 812 IPR001841 -
Bva01g01949 1077 CDD SF2_C_SNF 920 1028 - -
Bva01g01949 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 826 IPR013083 -
Bva01g01949 1077 Gene3D - 427 514 IPR038718 -
Bva01g01949 1077 Pfam Zinc finger, C3HC4 type (RING finger) 775 820 - -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 380 436 - -
Bva01g01949 1077 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 143 1076 - -
Bva01g01949 1077 Pfam SNF2-related domain 333 737 IPR000330 GO:0005524|GO:0140658
Bva01g01949 1077 ProSitePatterns Zinc finger RING-type signature. 791 800 IPR017907 -
Bva01g01949 1077 Gene3D - 298 393 IPR038718 -
Bva01g01949 1077 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 900 1072 IPR001650 -
Bva01g01949 1077 CDD DEXDc_SHPRH-like 330 660 - -
Bva01g01949 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 668 1076 IPR027417 -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 405 421 - -
Bva01g01949 1077 Gene3D - 521 672 IPR038718 -
Bva01g01949 1077 Gene3D - 675 1076 IPR027417 -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 422 436 - -
Bva01g01949 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 660 IPR027417 -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 163 231 - -
Bva01g01949 1077 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 345 622 IPR014001 -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 107 136 - -
Bva01g01949 1077 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 143 1076 - -
Bva01g01949 1077 SMART ultradead3 326 639 IPR014001 -
Bva01g01949 1077 MobiDBLite consensus disorder prediction 96 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01949 Bva-Chr1 19617193 19628448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01949 148 977 RAD5 or RAD16-like Gene Family AT1G50410 58.995 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva01g01949 SNF2_N 1.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01949 - - lang:109335781 1464.13