Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01940 ATGAGGATCCATCTTCATAATTCAACTGCTCCTGCATTTTTGATTACTTGTGATATATGCCATCGTGAGATAGAAACTGGTCCAGGTTGGCTTTGTGAAGTTTGCCCAGATTATGATATATGCAATGTCTGTTATCGTCAAAAGGACGGATCTGGAGGCATCGATCATCGTCCTAAGTTGACTAATCATCCATCAGCGACTGCACATAGGCACCATGTACCTTATGGGTTCAAATCTAACCTATGGAAAATGCAGGATCTTGTTGTGCATGCATCCCAATGTCATACTGCAGCACATGGTGACCCAATACCCCTGCTACGTCGACGTTATTATGTACGTTGCCGATATCCAGATTGCGGCAAGATGAAGGTGCTTTTTGACCATGGGGCACAATGCCCAACTCGTGCCTCTGGAGGCTGTGGTCTTTGTAAGAGAATGTGGTATTTGATTCAACTCCATTCTCAAGCATGCAAACAACCTCAGTGCTCCGTACCACGTTGCAGTGAGGTAAAAGAACACTTGAGgttgcagcagcagcagcagcggCAAGTCTG 554 0.4314 MRIHLHNSTAPAFLITCDICHREIETGPGWLCEVCPDYDICNVCYRQKDGSGGIDHRPKLTNHPSATAHRHHVPYGFKSNLWKMQDLVVHASQCHTAAHGDPIPLLRRRYYVRCRYPDCGKMKVLFDHGAQCPTRASGGCGLCKRMWYLIQLHSQACKQPQCSVPRCSEVKEHLRLQQQQQRQV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01940 184 Gene3D - 11 73 IPR043145 -
Bva01g01940 184 ProSiteProfiles Zinc finger ZZ-type profile. 12 68 IPR000433 GO:0008270
Bva01g01940 184 PANTHER HISTONE ACETYLTRANSFERASE HAC12 3 181 - -
Bva01g01940 184 Pfam TAZ zinc finger 85 167 IPR000197 -
Bva01g01940 184 SMART TAZ_2 74 168 IPR000197 -
Bva01g01940 184 PANTHER CBP/P300-RELATED 3 181 IPR013178 GO:0004402|GO:0006355|GO:0016573
Bva01g01940 184 SMART zz_5 11 58 IPR000433 GO:0008270
Bva01g01940 184 SUPERFAMILY TAZ domain 80 175 IPR035898 -
Bva01g01940 184 SUPERFAMILY RING/U-box 2 64 - -
Bva01g01940 184 Gene3D TAZ domain 77 184 IPR035898 -
Bva01g01940 184 ProSiteProfiles Zinc finger TAZ-type profile. 73 170 IPR000197 -
Bva01g01940 184 Pfam Zinc finger, ZZ type 15 48 IPR000433 GO:0008270
Bva01g01940 184 ProSitePatterns Zinc finger ZZ-type signature. 17 44 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01940 Bva-Chr1 19569096 19574273 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Bva01g01940 zf-TAZ 9.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01940 K04498 - jre:109021274 207.223