Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01871 ATGAGAGCAGGGAAGGGTAATCTGGAAGAAGACGAGTACGAGGAGGAAGAGTTCGGTTCTAAGAAAGAAGGGCCTTCGTCTGCGCCTAACAGCAACAACGTCAACAAAGAAGCGAAAGCTGTGGATAAGGCTAGTGCAACAAGGTCAAAACATTCAGTGACCGAGCAGCGAAGAAGGAGCAAGATAAATGAGAGATTTCAGACATTGAGGGATCTCATACCTCATAGTGATCAGAAGAGGGACACAGCATCGTTCCTATTAGAGGTGATTGAGTATGTTCAATACTTGCAAGAGAAGGTACAAAAGTATGAAGGTTCATATCAAAATTGGAGTCAAGAGCCCACAAAGTTGATGCCATGGAGAAACAGTCACTGGCGTGTCCAAAGCTTTGTCAATCAACCTCAAGCTGTAAAGAATGATTCTGGTCCAGTATCACCTTTTCCTGGGAAGTTTGATGAGAATAACATCGGTATCTCTCCAACTTTGCTCAGTGGCACCCAGAATATGATAGATTCTGATATCAACAAAACAGCAGAGAGGCAACCTGAATTAGCAGGAAAGGGAATACCTCTGCCTATGCCTATGCATGCTGTTCCTGTGAGAAGTGATGGTGCATTTGCTCATCCTCCGCAGGTCTCTGTTTCTGATGCACAATCAACTGAGCGTCCAGTCACTAGTGTACCACAGAACCAACAGGATGAACTTGCAATTGAAGGAGGCACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTGTTGAACAATTTGACTCAAGCGCTACAGAGTGCTGGTTTAGATTTGTCGGAGGCTAGCATCTCAGTTCAGATTAATCTTGGGAAGCGGGCAAACAGAGGACCAAGCAGTGGGACGTCTGCTCAGCAGAATCATGATAATACCCCTTGTAGTGACGAAGGAATAGCAGATTTTAGAGATGCAGGGAATGGAGAAGACTCTGATCAAGCTCAGAAGAGGCTGAGAACATA 983 0.4496 MRAGKGNLEEDEYEEEEFGSKKEGPSSAPNSNNVNKEAKAVDKASATRSKHSVTEQRRRSKINERFQTLRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSQEPTKLMPWRNSHWRVQSFVNQPQAVKNDSGPVSPFPGKFDENNIGISPTLLSGTQNMIDSDINKTAERQPELAGKGIPLPMPMHAVPVRSDGAFAHPPQVSVSDAQSTERPVTSVPQNQQDELAIEGGTISISSVYSQGLLNNLTQALQSAGLDLSEASISVQINLGKRANRGPSSGTSAQQNHDNTPCSDEGIADFRDAGNGEDSDQAQKRLRT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01871 327 PANTHER TRANSCRIPTION FACTOR BIM2 1 327 - -
Bva01g01871 327 Coils Coil 93 113 - -
Bva01g01871 327 MobiDBLite consensus disorder prediction 1 62 - -
Bva01g01871 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Bva01g01871 327 MobiDBLite consensus disorder prediction 212 232 - -
Bva01g01871 327 MobiDBLite consensus disorder prediction 281 301 - -
Bva01g01871 327 MobiDBLite consensus disorder prediction 24 38 - -
Bva01g01871 327 MobiDBLite consensus disorder prediction 309 327 - -
Bva01g01871 327 Gene3D - 43 118 IPR036638 GO:0046983
Bva01g01871 327 SMART finulus 52 102 IPR011598 GO:0046983
Bva01g01871 327 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Bva01g01871 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 119 IPR036638 GO:0046983
Bva01g01871 327 MobiDBLite consensus disorder prediction 281 327 - -
Bva01g01871 327 CDD bHLH_AtBIM_like 45 121 - -
Bva01g01871 327 MobiDBLite consensus disorder prediction 41 62 - -
Bva01g01871 327 MobiDBLite consensus disorder prediction 204 232 - -
Bva01g01871 327 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 327 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01871 Bva-Chr1 19161382 19165576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01871 1 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 59.655 2.48e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva01g01871 HLH 6.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01871 - - lang:109361152 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01871 01 19161382 19165576 Bva01g01871 01 19161382 19165576 ECH